CB417332

Overview
NameCB417332
Unique NameCB417332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26
Identity = 62/154 (40.26%), Postives = 95/154 (61.69%), Query Frame = 3
Query:  279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            P+ V    +II    +++  +++     ++ VG+   V    +E G  + +      +   L  ++DP V++M VE+ P  +Y D+GG   QI++++E VELP+ HPE +  +GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL
Sbjct:  114 PMSVGSLEEII----DESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 263          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  405 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            ++  M V + R+   +   LPP  D S+++M   EKPDVTY DVGG   Q +++RE VELP++  + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE
Sbjct:  131 LKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP+ D S++M+  +EKPDV Y+D+GG   Q +++RE VELP+ H E + ++GI+PP+GVL YGPPG GKT+LA AVA+ T A FIRV+GSE
Sbjct:  140 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSE 231          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L
Sbjct:  136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 256          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L
Sbjct:  136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 256          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 69/175 (39.43%), Postives = 103/175 (58.86%), Query Frame = 3
Query:  249 SDKQMMQEEQPLQVARCTKIISP----NPEDAKYVINVKQIAKFVVGLG-------DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            +DK  +  + P  VA   +II        + +K V+ VK   +  + L        DK+ P D+     VG++++ Y I   LPP+ D  V  M ++EKP   Y+D+GG  +QI+++ E V LPM H E+F  +GI PPKGVL YGPPGTGKTLLARA A +T++ ++++ G +L
Sbjct:   70 NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVV-VKASTRQTIFLAYPGIVDVDKLRPGDL-----VGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQL 238          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L
Sbjct:  101 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 221          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26
Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3
Query:  369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740
            V+GL D  K+ P D+     VGV+++ Y I   LP + D  V  M V+E+P   Y+D+GG  +QI+++ E + LPM H EKF  LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L
Sbjct:  120 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 240          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234          
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26
Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3
Query:  462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737
            LPP+ D S+ M+T ++KPDV Y D+GG   Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE
Sbjct:  143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234          
The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PRS4_ORYSJ1.571e-2640.2626S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS6B_YEAST2.680e-2652.2526S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_MANSE2.680e-2657.6126S protease regulatory subunit 6B OS=Manduca sext... [more]
PRS6A_RAT2.680e-2650.0026S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN2.680e-2650.0026S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_DICDI2.680e-2639.4326S protease regulatory subunit 6A homolog OS=Dict... [more]
PR6AB_XENLA2.680e-2650.0026S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PR6AA_XENLA2.680e-2650.0026S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6B_RAT3.500e-2658.7026S protease regulatory subunit 6B OS=Rattus norve... [more]
PRS6B_MACFA3.500e-2658.7026S protease regulatory subunit 6B OS=Macaca fasci... [more]

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Properties
Property NameValue
Genbank descriptionEST0409 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P081 similar to 26S protease regulatory subunit 7 (acc# O64982), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bp
CCAAGCTAGCAAAGGAAAGCAAAGCCATGGCACCGGAGCCGGAAGATGAG
ATCAAGGACGAGAAAAACCCTAGGCCTCTCGATGAAGACGATATCGCTCT
TCTCAAAACCTATGGTTTAGGACCTTATTCTACTAGCATTAAGAAAGCGG
AGAAAGAAATAAAGGATATGGCCAAGAAGGTCAATGACCTGTGTGGTATC
AAGGAGTCTGATACGGGATTAGCTGCACCTAGCCAGTGGGATCTTGTGTC
GGATAAGCAGATGATGCAAGAGGAACAGCCGCTTCAGGTAGCAAGATGCA
CCAAGATAATCAGTCCAAACCCTGAAGATGCCAAATATGTTATAAATGTT
AAGCAGATTGCAAAGTTTGTTGTTGGGCTTGGTGATAAAGTTTCCCCAAC
GGATATAGAAGAGGGCATGCGTGTGGGGGTTGACAGAAATAAATATCAGA
TTCAAATTCCCTTGCCTCCAAAAATTGATCCAAGTGTGACCATGATGACC
GTGGAAGAGAAGCCAGATGTTACATATAATGATGTTGGCGGATGCAAGGA
GCAGATTGAAAAGATGCGAGAAGTTGTTGAGCTACCTATGCTTCATCCTG
AGAAATTTGTAAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTATGCTAT
GGTCCTCCTGGCACTGGTAAAACATTATTAGCCAGAGCTGTAGCTAACAG
AACCGATGCTTGTTTTATTCGTGTGATTGGGAGTGAGCTTG
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