CB417332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2) HSP 1 Score: 119.783 bits (299), Expect = 1.571e-26 Identity = 62/154 (40.26%), Postives = 95/154 (61.69%), Query Frame = 3 Query: 279 PLQVARCTKIISPNPEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 P+ V +II +++ +++ ++ VG+ V +E G + + + L ++DP V++M VE+ P +Y D+GG QI++++E VELP+ HPE + +GI PPKGV+ YG PGTGKTLLA+AVAN T A F+RV+GSEL Sbjct: 114 PMSVGSLEEII----DESHAIVSSSVGPEYYVGILSFVDKDQLEPGCSILMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHPELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSEL 263
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 58/111 (52.25%), Postives = 78/111 (70.27%), Query Frame = 3 Query: 405 IEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 ++ M V + R+ + LPP D S+++M EKPDVTY DVGG Q +++RE VELP++ + + ++GIDPP+GVL YGPPGTGKT+L +AVAN T A FIRV GSE Sbjct: 131 LKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSE 241
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MANSE (26S protease regulatory subunit 6B OS=Manduca sexta PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 53/92 (57.61%), Postives = 72/92 (78.26%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP+ D S++M+ +EKPDV Y+D+GG Q +++RE VELP+ H E + ++GI+PP+GVL YGPPG GKT+LA AVA+ T A FIRV+GSE Sbjct: 140 LPPEADSSISMLQADEKPDVQYSDIGGMDTQKQEIREAVELPLTHVELYRQIGIEPPRGVLMYGPPGCGKTMLANAVAHHTTAAFIRVVGSE 231
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 256
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L Sbjct: 136 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 256
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 69/175 (39.43%), Postives = 103/175 (58.86%), Query Frame = 3 Query: 249 SDKQMMQEEQPLQVARCTKIISP----NPEDAKYVINVKQIAKFVVGLG-------DKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 +DK + + P VA +II + +K V+ VK + + L DK+ P D+ VG++++ Y I LPP+ D V M ++EKP Y+D+GG +QI+++ E V LPM H E+F +GI PPKGVL YGPPGTGKTLLARA A +T++ ++++ G +L Sbjct: 70 NDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVV-VKASTRQTIFLAYPGIVDVDKLRPGDL-----VGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQTNSTYLKLAGPQL 238
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L Sbjct: 101 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 221
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 2.680e-26 Identity = 63/126 (50.00%), Postives = 84/126 (66.67%), Query Frame = 3 Query: 369 VVGLGD--KVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSEL 740 V+GL D K+ P D+ VGV+++ Y I LP + D V M V+E+P Y+D+GG +QI+++ E + LPM H EKF LGI PPKGVL YGPPGTGKTLLARA A +T A F+++ G +L Sbjct: 120 VIGLVDAEKLKPGDL-----VGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQTKATFLKLAGPQL 240
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_RAT (26S protease regulatory subunit 6B OS=Rattus norvegicus GN=Psmc4 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP+ D S+ M+T ++KPDV Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234
BLAST of CB417332 vs. ExPASy Swiss-Prot
Match: PRS6B_MACFA (26S protease regulatory subunit 6B OS=Macaca fascicularis GN=PSMC4 PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.500e-26 Identity = 54/92 (58.70%), Postives = 72/92 (78.26%), Query Frame = 3 Query: 462 LPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSE 737 LPP+ D S+ M+T ++KPDV Y D+GG Q +++RE VELP+ H E + ++GIDPP+GVL YGPPG GKT+LA+AVA+ T A FIRV+GSE Sbjct: 143 LPPEADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHTTAAFIRVVGSE 234 The following BLAST results are available for this feature:
BLAST of CB417332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 240
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Sequences
The
following sequences are available for this feature:
EST sequence >CB417332 ID=CB417332; Name=CB417332; organism=Citrus sinensis; type=EST; length=741bpback to top |