CB417342

Overview
NameCB417342
Unique NameCB417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.191e-22
Identity = 54/98 (55.10%), Postives = 67/98 (68.37%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXA-KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            F+VDMPG+K  +IKVQVE+DNVL++S             KYVRMERR+GKFMRKF LPENA+++ ISAVC DGVL VTV            TI+V++A
Sbjct:   58 FVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVTVQKLPPPEPKKPKTIQVQVA 155          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.148e-19
Identity = 49/99 (49.49%), Postives = 66/99 (66.67%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXA-KYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            VF VDMPG+K  +I+VQ+E++NVL++S             K+VRMERR+GKFMRKF LP+NA++E ISA C DGVL VT+            TI+V++A
Sbjct:   58 VFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVTIPKLPPPEPKKPKTIQVQVA 156          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.333e-17
Identity = 47/103 (45.63%), Postives = 62/103 (60.19%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXX-----AKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVDXXXXXXXXXXXTIEVKIA 296
            V  VDMPG+   D++V+VED NVL IS                 KY+RMERR+GKFMR+F LPE+A+++ + A  +DGVLTVTVD            +EVK+A
Sbjct:   63 VLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVLTVTVDKKPPPEPKKPRVVEVKVA 165          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_SOLLC (17.8 kDa class I heat shock protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.514e-15
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF VD+PGLK  ++KV+VE+D VL IS            K+ RMER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   59 VFKVDLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDKWHRMERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.897e-14
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKFMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   66 VFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTV 144          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.235e-14
Identity = 40/79 (50.63%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKFMR+F LPENA +E + A  ++GVLTV V
Sbjct:   64 VFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVV 142          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.225e-14
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF VD+PG+K  ++KV+VED NVL++S            K+ R+ER  GKF+R+F LPE+A VE + A  ++GVLTVTV
Sbjct:   56 VFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTV 134          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.518e-14
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV++EDD VL IS            ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   48 VFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 126          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  G FMR+F LPENA VE + A  ++GVLTVTV
Sbjct:   58 VFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTV 136          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.207e-14
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV++EDD VL IS            ++ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   63 VFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTV 141          
The following BLAST results are available for this feature:
BLAST of CB417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS176_ARATH7.191e-2255.1017.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS177_ARATH1.148e-1949.4917.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ5.333e-1745.6319.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP11_SOLLC8.514e-1551.9017.8 kDa class I heat shock protein OS=Solanum lyc... [more]
HSP16_SOYBN1.897e-1451.9018.5 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ARATH3.235e-1450.6318.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16A_WHEAT4.225e-1449.3716.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HSP11_MEDSA5.518e-1448.1018.1 kDa class I heat shock protein (Fragment) OS=... [more]
HSP13_SOYBN7.207e-1450.6317.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_MEDSA7.207e-1446.8418.2 kDa class I heat shock protein OS=Medicago sa... [more]

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Properties
Property NameValue
Genbank descriptionEST0420 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P092 similar to small MW heat shock protein, class II (acc# AAD41409), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417342 ID=CB417342; Name=CB417342; organism=Citrus sinensis; type=EST; length=394bp
ACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTC
CAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGA
GGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCA
AGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATT
TCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCC
ACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAA
CTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTAT
TTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGG
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