CB417342

Overview
NameCB417342
Unique NameCB417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:268..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.413e-14
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VE+D VL IS            K+ R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   59 VFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.229e-13
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   54 VFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTV 132          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VED N+L IS             + R+ER  GKFMR+F LPENA VE + A  ++GVL+VTV
Sbjct:   61 VFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTV 139          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 38/79 (48.10%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VEDD VL IS            ++ R+ER  GKF+R+F LPENA ++ + A  ++GVLTVTV
Sbjct:   63 VFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTV 141          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   55 VFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTV 133          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.606e-13
Identity = 38/79 (48.10%), Postives = 53/79 (67.09%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV+VE+ NVL+IS            K+ R+ER  G+FMR+F LPENA V+ + A  ++GVLTVTV
Sbjct:   55 VFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTV 133          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            V   D+PGLK  ++KVQ+EDD VL IS             + R++R  GKFMR+F LPENA VE + A  ++GVLTVT+
Sbjct:   59 VLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTI 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   66 VFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 144          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.097e-13
Identity = 40/79 (50.63%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VED NVL IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   59 VFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.739e-13
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV+VED NVL IS             + R+ER  G+FMRKF LPENA V+ + A  ++GVLTVTV
Sbjct:   67 VFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTV 145          
The following BLAST results are available for this feature:
BLAST of CB417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP11_SOLPE9.413e-1449.3717.7 kDa class I heat shock protein OS=Solanum per... [more]
HS16C_ORYSJ1.229e-1348.1016.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP17_ARATH1.606e-1349.3717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_PEA1.606e-1348.1018.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HS16B_ORYSJ1.606e-1348.1016.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.606e-1348.1016.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HSP15_SOYBN2.097e-1348.1017.6 kDa class I heat shock protein OS=Glycine max... [more]
HS181_ORYSJ2.097e-1350.6318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ2.097e-1350.6317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_CHERU2.739e-1349.3718.3 kDa class I heat shock protein OS=Chenopodium... [more]

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Properties
Property NameValue
Genbank descriptionEST0420 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P092 similar to small MW heat shock protein, class II (acc# AAD41409), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417342 ID=CB417342; Name=CB417342; organism=Citrus sinensis; type=EST; length=394bp
ACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTC
CAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGA
GGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCA
AGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATT
TCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCC
ACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAA
CTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTAT
TTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGG
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