CB417342

Overview
NameCB417342
Unique NameCB417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2009 contig Csv1_Contig2009:268..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KVQ+EDD VL IS             + R+ER  GKF R+F LPENA V  + A  ++GVLTVTV
Sbjct:   59 VFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVLTVTV 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.577e-13
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VE+D VL IS             + R+ER  GKFMR+F LPENA ++ + A  ++GVLTVTV
Sbjct:   59 VFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTV 137          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.672e-13
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGL+  ++KV+VED N+L IS            K+ R+ER  GKF R+F LPENA +E I A  ++GVL+VTV
Sbjct:   62 VFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTV 140          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.101e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+V+D N+L IS            K+ R+ER  GKF+R+F LPEN   E I A  ++GVLTVTV
Sbjct:   64 VFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTV 142          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.041e-12
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+VE+  VL IS            K+ R+E   GKF+R+F LPENANV+ + A  ++GVLTVTV
Sbjct:   64 VFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTV 142          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.359e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV+V+D N+L IS            ++ R+ER  GKF+R+F LP+NA  E I A  ++GVLTVTV
Sbjct:   66 VFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTV 144          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.775e-12
Identity = 37/79 (46.84%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV+VED NVL++S            K+ R+ER  GKF+R+F L E+A VE + A  ++GVLTVTV
Sbjct:   56 VFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTV 134          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 36/79 (45.57%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV++E+  VL IS            K+ R+ER  GKF+R+F LPENA V+ + A   +GV+TVTV
Sbjct:   62 VFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTV 140          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.028e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV++EDD+VL IS             + R+ER  G+F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   60 VFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVTV 138          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++KV++E+D+VL IS             + R+ER  G+F R+F LPEN  ++ + A  ++GVLTVTV
Sbjct:   58 VFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTV 136          
The following BLAST results are available for this feature:
BLAST of CB417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HSP14_SOYBN3.577e-1349.3717.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE3.577e-1348.1017.6 kDa class I heat shock protein OS=Solanum per... [more]
HS17C_ARATH4.672e-1348.1017.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS177_ORYSJ6.101e-1348.1017.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP12_DAUCA1.041e-1248.1018.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ1.359e-1246.8417.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT1.775e-1246.8416.9 kDa class I heat shock protein 2 OS=Triticum ... [more]
HSP11_DAUCA3.028e-1245.5717.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS178_ARATH3.028e-1244.3017.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH8.810e-1243.0417.6 kDa class I heat shock protein 2 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0420 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P092 similar to small MW heat shock protein, class II (acc# AAD41409), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417342 ID=CB417342; Name=CB417342; organism=Citrus sinensis; type=EST; length=394bp
ACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTC
CAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGA
GGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCA
AGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATT
TCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCC
ACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAA
CTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTAT
TTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGG
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