CB417342

Overview
NameCB417342
Unique NameCB417342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length394
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.810e-12
Identity = 35/79 (44.30%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PG+K  ++KV++EDD+VL IS             + R+ER  G F RKF LPEN  ++ + A  ++GVLTVTV
Sbjct:   58 VFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVTV 136          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.963e-11
Identity = 32/79 (40.51%), Postives = 52/79 (65.82%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            V +VD+PGLK  DIK++VE++ VL +S             + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+
Sbjct:   87 VIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVLTLTL 165          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.348e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            V   D+PG+K  ++KV+VED  VL IS             + R+ER  GKF+R+F LPENA ++ + A+ ++GVLTV V
Sbjct:   57 VLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTVVV 135          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTVD 242
            V ++D+PGLK  +IKV+VE++ VL +S             + R+ER  GKF R+F LP+N +++++ A  ++GVLT+T+D
Sbjct:   79 VIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVLTLTLD 158          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 3
Query:    3 VFIVDMPGLKSGDIKVQVEDDNVLLISXXXXXXXXXXXAKYVRMERRVGKFMRKFVLPENANVEAISAVCQDGVLTVTV 239
            VF  D+PGLK  ++K++++D  VL IS             + R+ER  GK +R+F LPENA V+ + A  ++GVLTVTV
Sbjct:   58 VFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTV 136          
BLAST of CB417342 vs. ExPASy Swiss-Prot
Match: HS186_ORYSJ (18.6 kDa class III heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.6 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.741e-11
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 3
Query:    6 FIVDMPGLKSGDIKVQVEDDNVLLI-------SXXXXXXXXXXXAKYVRMERRVGK--FMRKFVLPENANVEAISAVCQDGVLTVTV 239
            F++D+PGL   DI+V +E+D VL++       +            KY+R+ERR     F RKF LPE+A+   ISA C++GVLTVTV
Sbjct:   68 FVLDVPGLSKSDIQVTLEEDRVLVMKSSNGAGNGKRKREEEEGECKYIRLERRASPRAFARKFRLPEDADTGGISARCENGVLTVTV 154          
The following BLAST results are available for this feature:
BLAST of CB417342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 46
Match NameE-valueIdentityDescription
HS17A_ARATH8.810e-1244.3017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP41_PEA1.963e-1140.5122.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP11_HELAN3.348e-1143.0417.6 kDa class I heat shock protein OS=Helianthus ... [more]
HSP41_SOYBN4.373e-1140.0022.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP11_SOYBN4.373e-1143.0417.3 kDa class I heat shock protein OS=Glycine max... [more]
HS186_ORYSJ9.741e-1142.5318.6 kDa class III heat shock protein OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionEST0420 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P092 similar to small MW heat shock protein, class II (acc# AAD41409), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417342 ID=CB417342; Name=CB417342; organism=Citrus sinensis; type=EST; length=394bp
ACGTGTTCATCGTCGACATGCCCGGACTGAAGTCGGGGGACATCAAGGTC
CAAGTGGAGGACGACAATGTGCTGCTCATAAGCGGAGAGAGGAAGCGGGA
GGAGGAGAAAGAGGGGGCCAAGTATGTGAGAATGGAGAGGAGGGTCGGCA
AGTTTATGAGGAAATTTGTGCTGCCTGAGAATGCTAACGTTGAAGCCATT
TCGGCTGTGTGTCAGGACGGAGTGTTGACTGTGACCGTCGATAAGCTGCC
ACCGCCGGAGCCCAAGAAGCCCAAGACCATTGAGGTTAAGATTGCTTGAA
CTTTAAAGAGAGAGAATATGCTGGATTGTGGGTGCTGATGTCTTTTCTAT
TTGCCGGTTGTTGTTATGAATAATTTTGCTTGTGGGTGTGACGG
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