CB417348

Overview
NameCB417348
Unique NameCB417348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSS1 (Chaperone protein dnaJ OS=Roseiflexus sp. (strain RS-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYG--DEKGSPGFDAGHPGNP 236
            +VLGV+RNASQ EI+KAF +L+ QYHPD NK   A+ KF EIN AY++LSD EKR  YD +G      +PGFD     +P
Sbjct:    9 EVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPTAAPGFDPFSSADP 88          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_PELCD (Chaperone protein dnaJ OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.165e-17
Identity = 49/101 (48.51%), Postives = 66/101 (65.35%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNK-NKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYFTSGGPGQSQFTSRPGE 302
            +VLGV RNAS+ EI+KA+ KL+++YHPDKN  +KAA++KF EI+ AY ILSD ++R  YD YG         AG  G  GG   ++SGG G + F    G+
Sbjct:    8 EVLGVHRNASETEIKKAYRKLAIKYHPDKNAGDKAAEDKFKEISEAYSILSDTQQRVIYDQYG--------HAGLNGGGGGGGSYSSGGFGGTPFEDLFGD 100          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNJB5_HUMAN (DnaJ homolog subfamily B member 5 OS=Homo sapiens GN=DNAJB5 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYTYFTSGGPGQSQFTS 290
            K+LG+   A++ EI+KA+ K++L+YHPDKNK   A+EKF EI  AYD+LSD +KR  YD YG+E    G   G  G   G  ++T  G   + F S
Sbjct:    7 KILGIPSGANEDEIKKAYRKMALKYHPDKNKEPNAEEKFKEIAEAYDVLSDPKKRGLYDQYGEEGLKTG--GGTSGGSSGSFHYTFHGDPHATFAS 100          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_ROSCS (Chaperone protein dnaJ OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 44/80 (55.00%), Postives = 55/80 (68.75%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYG--DEKGSPGFDAGHPGNP 236
            +VLGV+RNASQ EI+KAF +L+ QYHPD NK   A+ KF EIN AY++LSD EKR  YD +G      +PGFD     +P
Sbjct:    9 EVLGVQRNASQDEIKKAFRRLARQYHPDVNKAPDAEAKFKEINEAYEVLSDPEKRSMYDRFGHAGPTAAPGFDPFASADP 88          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_LISMO (Chaperone protein dnaJ OS=Listeria monocytogenes GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPG---NPGGYTYFTS------GGPGQSQFTSRPGEWQNM 314
            +VLG+ ++AS  EI+KA+ KLS QYHPD NK   A EKF EI+ AY+ LSD +KR  YD YG    + GF  G  G     GG++ F        GG G+ Q  + P +  ++
Sbjct:    8 EVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGGAGGGFGGGGFSGFEDIFDTFFGGGGRQQDPNAPRQGSDL 120          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_CHLP8 (Chaperone protein dnaJ OS=Chlorobaculum parvum (strain NCIB 8327) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 47/99 (47.47%), Postives = 63/99 (63.64%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE-KGSPGFDAGHPGNPGGYTY---------FTSGG 266
            ++LGV R+A + EI+KA+ KL+L+YHPDKN  NK A+EKF E N AY++LS+++KR+ YD +G    GS     G PG  GG  Y         FT GG
Sbjct:    7 EILGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEKFKEANEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGGPGGFGGGGYADINDIFEMFTGGG 105          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_BACHD (Chaperone protein dnaJ OS=Bacillus halodurans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 43/104 (41.35%), Postives = 65/104 (62.50%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGFDAGHPGNPGGYT-----YFTSGGPGQSQFTSRPG 299
            +VLGV+RNAS  E++KA+ KL+ +YHPD NK   A++KF E+  A+D LSD +K+ +YD +G    + GF  G  G+ GG++     +F  GG  ++    R G
Sbjct:    8 EVLGVDRNASADEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFGGGGGRRNPNAPRQG 111          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DJC16_RAT (DnaJ homolog subfamily C member 16 OS=Rattus norvegicus GN=Dnajc16 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.133e-17
Identity = 39/70 (55.71%), Postives = 55/70 (78.57%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGF 212
            +VLGV R ASQ +I+KA+ KL+ ++HPDKNK+  A++KF +I+ AY+ILS+EEKR NYD YGD   + G+
Sbjct:   32 RVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRTNYDHYGDAGENQGY 101          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSK (Chaperone protein dnaJ OS=Bacillus clausii (strain KSM-K16) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.398e-17
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKNKNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDEKGSPGF-DAGHPGNPGGYT-----YFTSGGPGQSQFTSRPGE 302
            +VLGV+RNAS  E++KA+ KL+ +YHPD NK + A+ KF E+  AYD LSD +K+  YD +G    + GF  AG  G+ GG++     +F  GG  ++    R G+
Sbjct:    8 EVLGVDRNASVEEVKKAYRKLARKYHPDVNKEEDAEAKFKEVKEAYDTLSDPQKKARYDQFGHADPNQGFGGAGASGDFGGFSDIFDMFFGGGGGRRNPNAPRQGD 113          
BLAST of CB417348 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSL (Chaperone protein dnaJ OS=Geobacter sulfurreducens GN=dnaJ PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.050e-17
Identity = 46/86 (53.49%), Postives = 58/86 (67.44%), Query Frame = 3
Query:    3 KVLGVERNASQREIQKAFHKLSLQYHPDKN-KNKAAQEKFAEINNAYDILSDEEKRKNYDLYGDE-KGSPGFDAGHPGNPGGYTYF 254
            +VLGV +NAS  EI+KAF KL++QYHPDKN  +K A+EKF EI  AY++LSD +KR  YD +G    G+ GF  G  G  G  T F
Sbjct:   10 EVLGVHKNASDTEIKKAFRKLAIQYHPDKNPDDKEAEEKFKEITEAYEVLSDPQKRAQYDQFGHAGVGAGGFSGGGFGGFGAGTPF 95          
The following BLAST results are available for this feature:
BLAST of CB417348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ROSS13.165e-1755.00Chaperone protein dnaJ OS=Roseiflexus sp. (strain ... [more]
DNAJ_PELCD3.165e-1748.51Chaperone protein dnaJ OS=Pelobacter carbinolicus ... [more]
DNJB5_HUMAN4.133e-1745.83DnaJ homolog subfamily B member 5 OS=Homo sapiens ... [more]
DNAJ_ROSCS4.133e-1755.00Chaperone protein dnaJ OS=Roseiflexus castenholzii... [more]
DNAJ_LISMO4.133e-1742.48Chaperone protein dnaJ OS=Listeria monocytogenes G... [more]
DNAJ_CHLP84.133e-1747.47Chaperone protein dnaJ OS=Chlorobaculum parvum (st... [more]
DNAJ_BACHD4.133e-1741.35Chaperone protein dnaJ OS=Bacillus halodurans GN=d... [more]
DJC16_RAT4.133e-1755.71DnaJ homolog subfamily C member 16 OS=Rattus norve... [more]
DNAJ_BACSK5.398e-1742.45Chaperone protein dnaJ OS=Bacillus clausii (strain... [more]
DNAJ_GEOSL7.050e-1753.49Chaperone protein dnaJ OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionEST0428 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P100 similar to DNAJ homolog (acc# NP_187509), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417348 ID=CB417348; Name=CB417348; organism=Citrus sinensis; type=EST; length=358bp
ACAAGGTTCTTGGCGTTGAGCGGAATGCGAGCCAGCGTGAGATTCAAAAA
GCTTTCCACAAGCTCTCTCTTCAATATCACCCGGACAAGAACAAAAATAA
GGCTGCTCAGGAGAAGTTCGCTGAGATTAATAATGCATATGATATTTTAT
CTGATGAAGAGAAGAGGAAAAATTATGATTTGTATGGGGATGAGAAGGGC
AGTCCTGGATTTGATGCTGGGCATCCTGGGAATCCAGGTGGGTATACATA
CTTCACAAGTGGTGGACCGGGACAAAGCCAGTTTACCTCTAGACCTGGTG
AATGGCAGAATATGGGGGGGCAGGGAAGTTCCCGGAGCTTTTCGTTTTCC
TTCGGCGG
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