CB417360

Overview
NameCB417360
Unique NameCB417360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_MEDSA (18.1 kDa class I heat shock protein (Fragment) OS=Medicago sativa GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 9.960e-44
Identity = 87/142 (61.27%), Postives = 107/142 (75.35%), Query Frame = 2
Query:  104 DPFSFDVWNPFKDFAFPSLS---SRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEIS 520
            DPFS DVW+PFKDF F + +   S FP+E SA V+TR+D KETPEAHVFK DL GL KE+VK++IEDDRVLQI+ +RNVE+EDKN+ WHRVERS GKF+RRFRLPEN K+DQV+A++E+G                 +IEIS
Sbjct:    1 DPFSLDVWDPFKDFPFTNSALSASSFPQENSAFVSTRIDWKETPEAHVFKADLPGLKKEEVKVEIEDDRVLQISGERNVEKEDKNDQWHRVERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEIKKPEVKSIEIS 142          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.898e-43
Identity = 90/157 (57.32%), Postives = 114/157 (72.61%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDS-ILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M+MIPSFF +   S I DPFS DVW+PFK+    SLS    RE SAIVN R+D +ETPEAHVFK DL GL KE+VK++IE+D VL+I+ +R+VE+EDKN+TWHRVERS G+F RRFRLPEN K+DQV+A++E+G                 +I+ISG
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLS----RENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVTVPKAETKKADVKSIQISG 153          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.204e-42
Identity = 86/157 (54.78%), Postives = 112/157 (71.34%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDS-ILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IP  FG +  S + DPFS DV++PF++  FP  +S    ETSA  NTR+D KETPEAHVFK DL GL  E+VK+++E+DRVLQI+ +RN+E+EDKN+ W RVERS GKF+RRFRLPEN K+DQV+AS+E+G                 +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPFRELGFPGTNSG---ETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.184e-42
Identity = 81/159 (50.94%), Postives = 111/159 (69.81%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAF---PSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPSFFGS+  ++L+PFS D+W+PF+D+        SS F +ET+A  NT +D KETP+AHVFK DL GL KE+VK+++E+ +VLQI+ +RN E+E+KN  WHRVE S GKFLRRFRLPEN  +D+V+A +E+G                 +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 9.322e-42
Identity = 74/156 (47.44%), Postives = 112/156 (71.79%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M+++PSFFG +  ++ DPFS DVW+PF+ F  P L++   ++ +A  N ++D +ETPEAHVFK D+ GL KE+VK+++ED  +LQI+ +R+ E E+K++TWHRVERS GKF+RRFRLPEN K+++V+AS+E+G                 +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.217e-41
Identity = 83/135 (61.48%), Postives = 108/135 (80.00%), Query Frame = 2
Query:   56 MAMIPSFFGSQH--DSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            M++IPSFFG+    +SI DPFS DVW+PFK+  FPS  S    ETSAI N R+D KET EAHVFK DL G+ KE+VK++IEDD VL+I+ +R+VE+E+K +TWHRVERS G+F R+F+LPEN K+DQV+AS+E+G
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSG---ETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENG 132          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.031e-40
Identity = 82/136 (60.29%), Postives = 107/136 (78.68%), Query Frame = 2
Query:   56 MAMIPSFFGSQ---HDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            M++IPSFFG+    +++I DPFS DVW+PFK+  FPS SS      SAI N R+D KET EAHVFK DL G+ KE+VK++IEDD VL+I+ +R+VE+E+K +TWHRVERS G F R+FRLPEN K+DQV+AS+E+G
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSS------SAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENG 130          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.999e-40
Identity = 78/133 (58.65%), Postives = 105/133 (78.95%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            M++IPSFF S+  +I DPFS D W+PF+      +S+   RET+AIVN R+D KETPEAHV K DL G+ KE+VK+++ED RVLQI+ +R  E+E+K++TWHRVERS GKF+RRFRLPEN K+D+V+A +E+G
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGI----ISTEPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENG 129          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.488e-39
Identity = 77/159 (48.43%), Postives = 110/159 (69.18%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPS---LSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPS FG +  ++ DPFS D+W+PF+ F  PS    ++   R+ +A  N R+D KETPEAHVFK DL GL KE+VK+++ED  VLQI+ +R+ E E+KN+ WHRVER+ GKF+RRFRLPEN K+++V+A++E+G                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANASTARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.807e-38
Identity = 75/157 (47.77%), Postives = 108/157 (68.79%), Query Frame = 2
Query:   56 MAMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPR-ETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            M++IPS FG +  ++ DPFS DV++PF+ F  PS  +  P  + +A  N ++D +ETPEAHVFK DL GL KE+VK+++ED  +LQI+ +R+ E E+KN+ WHRVERS GKF RRFRLPEN K+++++AS+E+G                 +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
The following BLAST results are available for this feature:
BLAST of CB417360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP11_MEDSA9.960e-4461.2718.1 kDa class I heat shock protein (Fragment) OS=... [more]
HS17B_ARATH2.898e-4357.3217.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HSP11_SOLPE3.204e-4254.7817.7 kDa class I heat shock protein OS=Solanum per... [more]
HSP12_DAUCA4.184e-4250.9418.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP17_ARATH9.322e-4247.4417.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS178_ARATH1.217e-4161.4817.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17A_ARATH1.031e-4060.2917.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HSP11_HELAN2.999e-4058.6517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ARATH1.488e-3948.4318.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH2.807e-3847.7717.6 kDa class I heat shock protein 3 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionEST0441 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P115 similar to 18.5 kDa heat shock protein, class I (acc# AAN74634), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417360 ID=CB417360; Name=CB417360; organism=Citrus sinensis; type=EST; length=543bp
CGGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAG
AAAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATT
TTGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTT
CCCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACA
CTCGCATGGACTGAAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGAT
CTTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAG
GGTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATG
AGACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTC
AGGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGA
CGGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAAC
TCAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATG
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