CB417360

Overview
NameCB417360
Unique NameCB417360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 7.643e-36
Identity = 76/141 (53.90%), Postives = 102/141 (72.34%), Query Frame = 2
Query:   56 MAMIPS--FFGSQHDSILDPFSFD-VWNPFKDFAFPSLSSRFPR-----ETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            M++IP+  F   +  +I DPFS D +W+PF  F  PS  S  PR     ET+A  N R+D KETPEAHVFK DL G+ KE+VK+++ED  VL+I+  R  E+E+KN+TWHRVERS G+F+R+FRLPEN K+DQV+A +E+G
Sbjct:    1 MSLIPNNWFNTGRRSNIFDPFSLDEIWDPF--FGLPSTLSTVPRSETAAETAAFANARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENG 139          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 74/157 (47.13%), Postives = 101/157 (64.33%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSLSSR-------FPR----ETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPFS D+W+PF  F F S  S        FPR    ET+A    R+D KETPEAHVFK D+ GL KE+VK++++D  +LQI+ +RN E+E+K + WHRVERS GKFLRRFRLP+N K +Q++AS+E+G                 +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 6.471e-35
Identity = 69/146 (47.26%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPFS D+W+PF       + +    +T+A  N R+D KETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 8.451e-35
Identity = 69/146 (47.26%), Postives = 96/146 (65.75%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPFS D+W+PF       + +    +T+A  N R+D KETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 72/134 (53.73%), Postives = 95/134 (70.90%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSLSSR-------FPR----ETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            +  ++ DPFS D+W+PF  F F S S         FPR    ET+A    R+D KETPEAHVFK D+ GL KE+VK+++ED  VLQI+ +R+ E+E+K + WHRVERS GKFLRRFRLPEN K +Q++AS+E+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENG 138          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 2.459e-34
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSLS-SRFPRETS---AIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPFS D+W+PF  F F S S S FPR  S   A    R+D KETPEAHVFK D+ GL KE+VK+++ED  VLQI+ +R  E+E+K + WHRVERS GKFLRRFRLPEN K +Q++AS+E+G                 +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.154e-34
Identity = 74/147 (50.34%), Postives = 100/147 (68.03%), Query Frame = 2
Query:   86 QHDSILDPFSFDVWNPFKDFAFPSL-SSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPF+ D W+PF D  F SL  +   R+T+A  N R+D KETPE+HVFK DL G+ KE+VK+++E+  VL I+  R+ E+EDKN+ WHRVERS G+F+RRFRLPEN K+DQV+AS+E+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DFWDPF-DGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG 149          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.301e-32
Identity = 72/149 (48.32%), Postives = 101/149 (67.79%), Query Frame = 2
Query:   86 QHDSILDPFSFDVW-NPFKDFA--FPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            +  ++ DPF+ D+W +PF  F    P++S     ET+A  N R+D KETPEAHVFKVDL G+ KE+VK+++ED  VL ++ +R+ E+EDKN+ WHRVERS GKF+RRFRLPE+ K+++V+A +E+G                 AIEISG
Sbjct:    5 RRSNVFDPFA-DLWADPFDTFRSIVPAISGG-SSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 151          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.926e-32
Identity = 71/149 (47.65%), Postives = 95/149 (63.76%), Query Frame = 2
Query:  104 DPFSFDVWNPFKDFAF------PSLSSRFPRETS---AIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            DPFS D+W+P   F F       S  S FPR  S   A    R+D KETPE HVFK D+ GL KE+VK++++D  +LQI+ +R+ E+E+K++ WHRVERS GKFLRRFRLPEN K +Q++AS+E+G                 +I+ISG
Sbjct:   11 DPFSLDLWDPVDGFPFGSGGSSSSSGSLFPRANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQISG 159          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 70/146 (47.95%), Postives = 97/146 (66.44%), Query Frame = 2
Query:   95 SILDPFSFDVW-NPFKDFA--FPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDGXXXXXXXXXXXXXXXXXAIEISG 523
            ++ DPF+ D+W +PF  F    P++S     ET+A  N RMD KETPEAHVFK DL G+ KE+VK+++ED  VL ++ +R  E+EDKN+ WHRVERS GKF+RRFRL E+ K+++V+A +E+G                 AI+ISG
Sbjct:    8 NVFDPFA-DLWADPFDTFRSIVPAISGG-GSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQISG 151          
The following BLAST results are available for this feature:
BLAST of CB417360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP11_CHERU7.643e-3653.9018.3 kDa class I heat shock protein OS=Chenopodium... [more]
HS17A_ORYSJ6.471e-3547.1317.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_ORYSJ6.471e-3547.2616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS16B_ORYSJ8.451e-3547.2616.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS181_ORYSJ2.459e-3453.7318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ2.459e-3450.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16C_ORYSJ7.154e-3450.3416.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HS16A_WHEAT2.301e-3248.3216.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS177_ORYSJ3.926e-3247.6517.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT1.263e-3047.9516.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionEST0441 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P115 similar to 18.5 kDa heat shock protein, class I (acc# AAN74634), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417360 ID=CB417360; Name=CB417360; organism=Citrus sinensis; type=EST; length=543bp
CGGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAG
AAAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATT
TTGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTT
CCCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACA
CTCGCATGGACTGAAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGAT
CTTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAG
GGTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATG
AGACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTC
AGGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGA
CGGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAAC
TCAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATG
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