CB417360

Overview
NameCB417360
Unique NameCB417360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6778 contig Csv1_Contig6778:374..916. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.360e-15
Identity = 40/98 (40.82%), Postives = 60/98 (61.22%), Query Frame = 2
Query:  161 SSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            S  + R+  A+  T  D KE P ++VF VD+ GL   D+K+Q+E D VL I+  RN E E +   + R+ER  GKF+++F LPE+   D++ A  +DG
Sbjct:   38 SRAYVRDARAMAATPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDG 135          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 37/95 (38.95%), Postives = 58/95 (61.05%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+  T  D KE P ++VF++D+ GL   D+K+Q+EDD +L I  +R  + E +   + R+ER  GK +R+F LPEN   D + A  +DG
Sbjct:   40 YVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDG 134          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.657e-14
Identity = 48/140 (34.29%), Postives = 77/140 (55.00%), Query Frame = 2
Query:   59 AMIPSFFGSQHDSILDPFSFDVWNPFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIED-DRVLQITADRN-------VEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            A++P  +G   D   DPF     +P +  A    ++    E +A+   R D KETPEAHV  VD+ G+ + DV++++++  RVL+++ +R         E E     WHR ER+ G+F RRFR+P    + +V A ++DG
Sbjct:   29 ALVPYGYGYMLD---DPFRVLEQSPLRP-AGGVAAAAAAGEPAAVALARCDWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDG 164          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.821e-14
Identity = 37/95 (38.95%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+  T  D KE P ++VF VD+ G+   D+K+Q+ED+ VL I+ +R  E E +   + ++ER  GK +R+F LPEN  I+ + A  +DG
Sbjct:   33 YVRDAKAMAATPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDG 127          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.074e-13
Identity = 42/108 (38.89%), Postives = 65/108 (60.19%), Query Frame = 2
Query:  131 PFKDFAFPSLSSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            P  D A    +  + R+  A+  T  D KE   A+ F VD+ GL+  D+++Q+ED+RVL I+ +R  E E ++  + R+ER  GKF+R+F LP+N  +D+V A   DG
Sbjct:   23 PDGDKAGGGATRTYVRDARAMAATPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDG 129          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 40/101 (39.60%), Postives = 60/101 (59.41%), Query Frame = 2
Query:  173 PRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQI-------TADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            P   SA     MD  ETP +HV ++++ GL K+DVK+Q+ED  VL +        A++  ERE K+  WH  ER R +F R   LP   +++Q+RAS+++G
Sbjct:   21 PDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKERERE-KDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNG 120          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.403e-13
Identity = 36/96 (37.50%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVE-REDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+  T  D  E P A+ F VD+ G+  +++K+Q+E+D VL ++ +R  E +E++   + R+ER  GKF+R+F+LPEN  +D++ A   DG
Sbjct:   35 YMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDG 130          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.832e-13
Identity = 37/88 (42.05%), Postives = 55/88 (62.50%), Query Frame = 2
Query:  206 MD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSR-----GKFLRRFRLPENGKIDQVRASIEDG 454
            +D  E+  +H+FK+++ G  KED+K+QIE+  VL I  +   E + +N  WH  ER        +FLRR  LPEN K+DQV+A +E+G
Sbjct:   24 IDWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENG 111          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNE--TWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+  T  D KE P ++VF  D+ G+   ++K+Q+EDD VL ++ +R    +D+ +   + R+ER  GKF+R+F LPEN  ++ + A  +DG
Sbjct:   46 YVRDAKAMAATPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDG 142          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 39/92 (42.39%), Postives = 59/92 (64.13%), Query Frame = 2
Query:  179 ETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            +  A+  T  D KE P A+ F VD+ GL   D+K+Q+ED+RVL I+ +R  E E ++  + R+ER  GKF+R+F LP+N  +D++ A   DG
Sbjct:   46 DARAMAVTPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRRE-EREDAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDG 136          
The following BLAST results are available for this feature:
BLAST of CB417360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_HELAN4.360e-1540.8217.9 kDa class II heat shock protein OS=Helianthus... [more]
HSP21_SOYBN1.657e-1438.9517.9 kDa class II heat shock protein OS=Glycine ma... [more]
HS219_ORYSJ1.657e-1434.2921.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_PEA4.821e-1438.9517.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP23_MAIZE1.074e-1338.8917.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP16_ORYSJ1.403e-1339.6016.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH1.403e-1337.5017.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HS157_ARATH1.832e-1342.0515.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP22_IPONI3.125e-1336.0818.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_MAIZE3.125e-1342.3917.5 kDa class II heat shock protein OS=Zea mays P... [more]

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Properties
Property NameValue
Genbank descriptionEST0441 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P115 similar to 18.5 kDa heat shock protein, class I (acc# AAN74634), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417360 ID=CB417360; Name=CB417360; organism=Citrus sinensis; type=EST; length=543bp
CGGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAG
AAAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATT
TTGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTT
CCCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACA
CTCGCATGGACTGAAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGAT
CTTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAG
GGTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATG
AGACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTC
AGGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGA
CGGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAAC
TCAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATG
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