CB417360

Overview
NameCB417360
Unique NameCB417360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.125e-13
Identity = 36/99 (36.36%), Postives = 63/99 (63.64%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADR----NVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+  T  D K+ P A+ F VD+ GL   D+K+Q+E++R+L I+ +R      E ++++  + R+ER  GKF+R+F LP+N  +D++ A  +DG
Sbjct:   43 YVRDARAMAATPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDG 141          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.187e-12
Identity = 38/99 (38.38%), Postives = 59/99 (59.60%), Query Frame = 2
Query:  161 SSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDK-NETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            S  F  +  A+  T  D KE P ++VF +D+ GL   D+K+Q++ D VL I+ +R  E E+K    + R+ER  GK +R+F LPEN   +++ A  +DG
Sbjct:   32 SRTFMLDAKAMAATPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDG 130          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.551e-12
Identity = 34/99 (34.34%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  161 SSRFPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVE-REDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            S  + R+  A+  T  D  E P+A+VF VD+ G+  +++++QIE++ VL ++  R  + +E++   + R+ER  GKF+R+F+LP+N  ++++ A+  DG
Sbjct:   33 SRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDG 131          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HS185_ARATH (18.5 kDa class IV heat shock protein OS=Arabidopsis thaliana GN=HSP18.5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.925e-11
Identity = 48/133 (36.09%), Postives = 68/133 (51.13%), Query Frame = 2
Query:   83 SQHDSILDPFSFDVWNPFKDFA---------FPSLSSR-FPRETSAIVNTRMD*KETPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNETWHRVERSRGKFLRRFRLPENGKIDQVRASIED 451
            S  D I +PF  ++ N F DF          FPSLS   FP+ +S+ VNT+++  ETP AHVFK  L G+ +++V   ++++  LQI    N                  KF+ RF+LP N   DQV A +ED
Sbjct:   13 SPGDRIWEPF--ELMNTFLDFPSPALFLSHHFPSLSREIFPQTSSSTVNTQLNWTETPTAHVFKAYLPGVDQDEVIAFVDEEGYLQICTGDN------------------KFMSRFKLPNNALTDQVTAWMED 125          
BLAST of CB417360 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 40/102 (39.22%), Postives = 59/102 (57.84%), Query Frame = 2
Query:  170 FPRETSAIVNTRMD*KE--TPEAHVFKVDLAGLTKEDVKLQIEDDRVLQITADRNVEREDKNE-----TWHRVERSRGKFLRRFRLPENGKIDQVRASIEDG 454
            + R+  A+ NT MD KE     A V  VD+ G+   DV++++ED  VL I+ +R     D ++      + R+ER  GKF+RRF LPE+  +D VRA  +DG
Sbjct:   39 YVRDRRAMANTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDG 140          
The following BLAST results are available for this feature:
BLAST of CB417360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP18_ORYSJ3.125e-1336.3618.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_IPONI1.187e-1238.3817.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS177_ARATH1.551e-1234.3417.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS185_ARATH2.925e-1136.0918.5 kDa class IV heat shock protein OS=Arabidopsi... [more]
HSP19_ORYSJ3.820e-1139.2219.0 kDa class II heat shock protein OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionEST0441 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P115 similar to 18.5 kDa heat shock protein, class I (acc# AAN74634), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417360 ID=CB417360; Name=CB417360; organism=Citrus sinensis; type=EST; length=543bp
CGGCAACCAATCTAGTATCAAAACCTCACATTCTGTAAGCATTTATCAAG
AAAAAATGGCGATGATTCCAAGCTTCTTCGGTAGCCAGCATGACAGCATT
TTGGATCCCTTCTCTTTCGATGTTTGGAACCCGTTCAAGGACTTTGCTTT
CCCCTCACTTTCCTCTCGATTCCCTCGAGAAACCTCAGCTATTGTTAACA
CTCGCATGGACTGAAAGGAAACCCCAGAAGCTCACGTATTCAAGGTGGAT
CTTGCAGGTCTTACGAAAGAGGACGTGAAGCTCCAGATTGAAGACGACAG
GGTGCTTCAGATAACAGCAGACAGGAATGTTGAGAGGGAAGACAAGAATG
AGACATGGCATCGTGTAGAGCGCAGCAGAGGCAAGTTCTTGAGGAGGTTC
AGGTTGCCGGAGAATGGGAAGATTGATCAGGTTAGGGCTTCTATTGAGGA
CGGAGTTCTTACTGTTACAGTTCCTAAGGAAGAAGTGAAAAAACCTGAAC
TCAAGGCCATTGAAATCTCTGGTTGAAGCAGTATATGTTTATG
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