CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_TOBAC (30S ribosomal protein S19, chloroplastic OS=Nicotiana tabacum GN=rps19 PE=3 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_SOLTU (30S ribosomal protein S19, chloroplastic OS=Solanum tuberosum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_SOLLC (30S ribosomal protein S19, chloroplastic OS=Solanum lycopersicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_SOLBU (30S ribosomal protein S19, chloroplastic OS=Solanum bulbocastanum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_NICSY (30S ribosomal protein S19, chloroplastic OS=Nicotiana sylvestris GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_ATRBE (30S ribosomal protein S19, chloroplastic OS=Atropa belladonna GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KIDKLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIDKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_POPTR (30S ribosomal protein S19, chloroplastic OS=Populus trichocarpa GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_POPAL (30S ribosomal protein S19, chloroplastic OS=Populus alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLLRKI+KLNTKAEK +I+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLRKINKLNTKAEKNLIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_GOSHI (30S ribosomal protein S19, chloroplastic OS=Gossypium hirsutum GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 84/92 (91.30%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_TOBAC4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_SOLTU4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLLC4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_SOLBU4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Solanu... [more]
RR19_NICSY4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_ATRBE4.717e-4591.3030S ribosomal protein S19, chloroplastic OS=Atropa... [more]
RR19_POPTR6.161e-4590.2230S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_POPAL6.161e-4590.2230S ribosomal protein S19, chloroplastic OS=Populu... [more]
RR19_GOSHI6.161e-4591.3030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_GOSBA6.161e-4591.3030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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