CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CYAP8 (30S ribosomal protein S19 OS=Cyanothece sp. (strain PCC 8801) GN=rpsS PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.428e-33
Identity = 62/90 (68.89%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV++ LL KI+KLN K +K++I TWSRASTI+P MVGHTIA+HNG++H+P+Y++++MVGHKLGEFAPT  FRGHAK+D +SRR
Sbjct:    3 RSLKKGPFVSDSLLTKIEKLNEKGDKQVIKTWSRASTILPQMVGHTIAVHNGKQHVPVYVSEQMVGHKLGEFAPTRTFRGHAKSDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_THEEB (30S ribosomal protein S19 OS=Thermosynechococcus elongatus (strain BP-1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 3.171e-33
Identity = 62/89 (69.66%), Postives = 77/89 (86.52%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSR 356
            RSLKK PFVA+HLLRKI+ LN +  KE+I TWSRASTI+P M+GHTIA+HNG++H+P+YIT++MVGHKLGEFAPT NFR H K D ++R
Sbjct:    3 RSLKKGPFVADHLLRKIEALNERNAKEVIKTWSRASTIVPEMIGHTIAVHNGKQHVPVYITEQMVGHKLGEFAPTRNFRSHVKGDKKAR 91          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_MICAN (30S ribosomal protein S19 OS=Microcystis aeruginosa (strain NIES-843) GN=rpsS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 61/90 (67.78%), Postives = 78/90 (86.67%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFVA HL+ KI+KLN +  K++I TWSRASTIIP MVGHTIA+HNG++H+P+Y++++MVGHKLGEFAPT  FRGHAK+D ++ R
Sbjct:    3 RSLKKGPFVAGHLMEKIEKLNAQGSKQVIKTWSRASTIIPDMVGHTIAVHNGKQHVPVYVSEQMVGHKLGEFAPTRTFRGHAKSDKKAGR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CYAA5 (30S ribosomal protein S19 OS=Cyanothece sp. (strain ATCC 51142) GN=rpsS PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 5.410e-33
Identity = 61/92 (66.30%), Postives = 81/92 (88.04%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RSLKK PF+A+ LL KI+KLN K +K++I TWSRASTIIP M+GHTIA+HNG++H+PI+I+++MVGHKLGEFAPT  FRGH+K D ++RR
Sbjct:    1 MSRSLKKGPFIADSLLTKIEKLNEKGDKQVIKTWSRASTIIPAMIGHTIAVHNGKQHVPIFISEQMVGHKLGEFAPTRTFRGHSKGDKKARR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ANAVT (30S ribosomal protein S19 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpsS PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.227e-33
Identity = 61/90 (67.78%), Postives = 79/90 (87.78%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+A+HLL KI+KLN K EK++I TWSRASTI+P MVGHTIA+HNGR+H+P++I+++MVGHKLGEFAPT  +RGH K+D ++ R
Sbjct:    3 RSLKKGPFIADHLLSKIEKLNDKNEKQVIKTWSRASTILPLMVGHTIAVHNGRQHVPVFISEQMVGHKLGEFAPTRTYRGHGKSDKKAGR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_SYNP2 (30S ribosomal protein S19 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rpsS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.205e-32
Identity = 59/90 (65.56%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+A+ LL+KI+KLN   +K++I TWSRASTI+P MVGHTIA+HNGR+H+P++++++MVGHKLGEFAPT  F+GHAK+D ++RR
Sbjct:    3 RSLKKGPFIADSLLKKIEKLNASGDKQVIKTWSRASTILPQMVGHTIAVHNGRQHVPVFVSEQMVGHKLGEFAPTRTFKGHAKSDKKARR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ACAM1 (30S ribosomal protein S19 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsS PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.205e-32
Identity = 59/91 (64.84%), Postives = 79/91 (86.81%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSR 356
            ++RSLKK PFVA+HLL K++ LN K EK++I TWSRASTIIP M+GHTIA+HNGR+H+P+Y++++MVGHKLGEFAPT  F+ H+K D ++R
Sbjct:    1 MSRSLKKGPFVADHLLTKVENLNEKGEKQVIKTWSRASTIIPQMIGHTIAVHNGRQHVPVYVSEQMVGHKLGEFAPTRTFKSHSKGDKKAR 91          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_LEPTE (30S ribosomal protein S19, chloroplastic OS=Leptosira terrestris GN=rps19 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.205e-32
Identity = 60/94 (63.83%), Postives = 81/94 (86.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGH--AKNDNRSRR 359
            ++RSL K PF+A+HLL+KI KLN + +K++I+TWSRASTI+P M+GHTIA+HNGREH+P++ITD+MVGHKLGEF+PT  +RGH   K D +S+R
Sbjct:    1 MSRSLTKGPFIADHLLKKIQKLNAQGKKKVIVTWSRASTIVPLMIGHTIAVHNGREHIPVFITDQMVGHKLGEFSPTRTYRGHIKTKGDKKSKR 94          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_SYNY3 (30S ribosomal protein S19 OS=Synechocystis sp. (strain PCC 6803) GN=rpsS PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.574e-32
Identity = 60/90 (66.67%), Postives = 79/90 (87.78%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFVA  LLRKIDKLN K +K+++ TWSRASTI+P MVGHTIA+HNGR+H+P++++++MVGHKLGEFAPT  FR H+K+D ++R+
Sbjct:    3 RSLKKGPFVAASLLRKIDKLNDKGDKQVVKTWSRASTILPQMVGHTIAVHNGRQHVPVFVSEQMVGHKLGEFAPTRTFRSHSKSDKKARK 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ANASP (30S ribosomal protein S19 OS=Anabaena sp. (strain PCC 7120) GN=rpsS PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.056e-32
Identity = 60/90 (66.67%), Postives = 79/90 (87.78%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+A+HLL KI+KLN + EK++I TWSRASTI+P MVGHTIA+HNGR+H+P++I+++MVGHKLGEFAPT  +RGH K+D ++ R
Sbjct:    3 RSLKKGPFIADHLLSKIEKLNDRNEKQVIKTWSRASTILPLMVGHTIAVHNGRQHVPVFISEQMVGHKLGEFAPTRTYRGHGKSDKKAGR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_CYAP82.428e-3368.8930S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RS19_THEEB3.171e-3369.6630S ribosomal protein S19 OS=Thermosynechococcus e... [more]
RS19_MICAN5.410e-3367.7830S ribosomal protein S19 OS=Microcystis aeruginos... [more]
RS19_CYAA55.410e-3366.3030S ribosomal protein S19 OS=Cyanothece sp. (strai... [more]
RS19_ANAVT9.227e-3367.7830S ribosomal protein S19 OS=Anabaena variabilis (... [more]
RS19_SYNP21.205e-3265.5630S ribosomal protein S19 OS=Synechococcus sp. (st... [more]
RS19_ACAM11.205e-3264.8430S ribosomal protein S19 OS=Acaryochloris marina ... [more]
RR19_LEPTE1.205e-3263.8330S ribosomal protein S19, chloroplastic OS=Leptos... [more]
RS19_SYNY31.574e-3266.6730S ribosomal protein S19 OS=Synechocystis sp. (st... [more]
RS19_ANASP2.056e-3266.6730S ribosomal protein S19 OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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