CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_MANES (30S ribosomal protein S19, chloroplastic OS=Manihot esculenta GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 8.046e-45
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KI+KLN KAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLKKINKLNNKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PANGI (30S ribosomal protein S19, chloroplastic OS=Panax ginseng GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.051e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVAN LLRKIDKLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYI DRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANRLLRKIDKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYINDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_MORIN (30S ribosomal protein S19, chloroplastic OS=Morus indica GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.051e-44
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLLRKI+ LNTKAEKEII+TWSRASTIIPTM+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    1 MARSLKKNPFVANHLLRKINMLNTKAEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_DAUCA (30S ribosomal protein S19, chloroplastic OS=Daucus carota GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.051e-44
Identity = 85/92 (92.39%), Postives = 90/92 (97.83%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVAN LLRKID LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANRLLRKIDNLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_AETGR (30S ribosomal protein S19, chloroplastic OS=Aethionema grandiflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.051e-44
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_NICTO (30S ribosomal protein S19, chloroplastic OS=Nicotiana tomentosiformis GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.372e-44
Identity = 83/92 (90.22%), Postives = 91/92 (98.91%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL+KI+KLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLKKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDSMVGHKLGEFAPTLNFRGHAKSDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_AETCO (30S ribosomal protein S19, chloroplastic OS=Aethionema cordifolium GN=rps19 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.372e-44
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFAPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_OLIPU (30S ribosomal protein S19, chloroplastic OS=Olimarabidopsis pumila GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.058e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_NASOF (30S ribosomal protein S19, chloroplastic OS=Nasturtium officinale GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.058e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
[Close]
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_LEPVR (30S ribosomal protein S19, chloroplastic OS=Lepidium virginicum GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.058e-44
Identity = 84/92 (91.30%), Postives = 89/92 (96.74%), Query Frame = 3 
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVA HLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YI D MVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFVAKHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYIIDLMVGHKLGEFSPTINFRGHAKNDNRSRR 92
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_MANES8.046e-4590.2230S ribosomal protein S19, chloroplastic OS=Maniho... [more]
RR19_PANGI1.051e-4492.3930S ribosomal protein S19, chloroplastic OS=Panax ... [more]
RR19_MORIN1.051e-4490.2230S ribosomal protein S19, chloroplastic OS=Morus ... [more]
RR19_DAUCA1.051e-4492.3930S ribosomal protein S19, chloroplastic OS=Daucus... [more]
RR19_AETGR1.051e-4493.4830S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_NICTO1.372e-4490.2230S ribosomal protein S19, chloroplastic OS=Nicoti... [more]
RR19_AETCO1.372e-4492.3930S ribosomal protein S19, chloroplastic OS=Aethio... [more]
RR19_OLIPU3.058e-4491.3030S ribosomal protein S19, chloroplastic OS=Olimar... [more]
RR19_NASOF3.058e-4491.3030S ribosomal protein S19, chloroplastic OS=Nastur... [more]
RR19_LEPVR3.058e-4491.3030S ribosomal protein S19, chloroplastic OS=Lepidi... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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