CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_GUIAB (30S ribosomal protein S19, chloroplastic OS=Guizotia abyssinica GN=rps19 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.588e-43
Identity = 83/92 (90.22%), Postives = 90/92 (97.83%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVAN+LL+KI+KLNTK EKEIIITWSRASTIIP MVGHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAK+DNRSRR
Sbjct:    1 MTRSLKKNPFVANNLLKKINKLNTKEEKEIIITWSRASTIIPIMVGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLNFRGHAKSDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_ACOCL (30S ribosomal protein S19, chloroplastic OS=Acorus calamus GN=rps19 PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.766e-43
Identity = 80/92 (86.96%), Postives = 88/92 (95.65%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL KI+KLN K EKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDN+SRR
Sbjct:    1 MTRSLKKNPFVANHLLEKIEKLNMKEEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CUCSA (30S ribosomal protein S19, chloroplastic OS=Cucumis sativus GN=rps19 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.285e-42
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFV NHLL+KI+KLNTK EKEII+TWSRASTIIPTM+GHTIA+HNG++HLP+YITDRMVGHKLGEFAPT NFRGH KNDNRSRR
Sbjct:    1 MARSLKKNPFVGNHLLKKINKLNTKGEKEIIVTWSRASTIIPTMIGHTIAVHNGKDHLPVYITDRMVGHKLGEFAPTRNFRGHVKNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CICAR (30S ribosomal protein S19, chloroplastic OS=Cicer arietinum GN=rps19 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.285e-42
Identity = 81/90 (90.00%), Postives = 87/90 (96.67%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKKNPFVANHLLRKI+KLNTK EKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PT+ FRG+AKND +SRR
Sbjct:    3 RSLKKNPFVANHLLRKINKLNTKGEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTLTFRGYAKNDTKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CHLSC (30S ribosomal protein S19, chloroplastic OS=Chloranthus spicatus GN=rps19 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.191e-42
Identity = 78/92 (84.78%), Postives = 88/92 (95.65%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL K++KLN + EK+II+TWSR+STIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MTRSLKKNPFVANHLLEKVEKLNMREEKKIIVTWSRSSTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_LOTJA (30S ribosomal protein S19, chloroplastic OS=Lotus japonicus GN=rps19 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSL KNPFVAN LLRKI+ LNTK+EKEIIITWSR STIIP M+GHTIAIHNG+EHLPIY+TDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLTKNPFVANRLLRKINNLNTKSEKEIIITWSRTSTIIPAMIGHTIAIHNGKEHLPIYVTDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_ILLOL (30S ribosomal protein S19, chloroplastic OS=Illicium oligandrum GN=rps19 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.738e-42
Identity = 79/92 (85.87%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLL KI+KLN + EKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MARSLKKNPFVANHLLGKIEKLNMREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PIPCE (30S ribosomal protein S19, chloroplastic OS=Piper cenocladum GN=rps19 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.087e-41
Identity = 78/92 (84.78%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKK+PFVANHLL+KI+KLN K  KEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MARSLKKSPFVANHLLKKIEKLNMKGGKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_BUXMI (30S ribosomal protein S19, chloroplastic OS=Buxus microphylla GN=rps19 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.855e-41
Identity = 77/92 (83.70%), Postives = 88/92 (95.65%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLL KI+KLN +A+KEII+TWSRASTIIPTM+GHTIAIHNG+EHLPI+ITDRMVGHKLGEFAPT+NFR HA+NDN+SRR
Sbjct:    1 MARSLKKNPFVANHLLEKIEKLNMRAKKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIFITDRMVGHKLGEFAPTLNFREHARNDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_LIRTU (30S ribosomal protein S19, chloroplastic OS=Liriodendron tulipifera GN=rps19 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.049e-41
Identity = 77/92 (83.70%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVAN+ L KI+KLN + EKEIIITWSRASTIIPTM+GHTIAIHNG++HLPIYITDRMVGHKLGEFAPT+ F+GHA+NDNRSRR
Sbjct:    1 MTRSLKKNPFVANNFLGKIEKLNMREEKEIIITWSRASTIIPTMIGHTIAIHNGKDHLPIYITDRMVGHKLGEFAPTLTFKGHARNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_GUIAB2.588e-4390.2230S ribosomal protein S19, chloroplastic OS=Guizot... [more]
RR19_ACOCL5.766e-4386.9630S ribosomal protein S19, chloroplastic OS=Acorus... [more]
RR19_CUCSA1.285e-4284.7830S ribosomal protein S19, chloroplastic OS=Cucumi... [more]
RR19_CICAR1.285e-4290.0030S ribosomal protein S19, chloroplastic OS=Cicer ... [more]
RR19_CHLSC2.191e-4284.7830S ribosomal protein S19, chloroplastic OS=Chlora... [more]
RR19_LOTJA3.738e-4285.8730S ribosomal protein S19, chloroplastic OS=Lotus ... [more]
RR19_ILLOL3.738e-4285.8730S ribosomal protein S19, chloroplastic OS=Illici... [more]
RR19_PIPCE1.087e-4184.7830S ribosomal protein S19, chloroplastic OS=Piper ... [more]
RR19_BUXMI1.855e-4183.7030S ribosomal protein S19, chloroplastic OS=Buxus ... [more]
RR19_LIRTU7.049e-4183.7030S ribosomal protein S19, chloroplastic OS=Liriod... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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