CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_PECCP (30S ribosomal protein S19 OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P++++D MVGHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ERWT9 (30S ribosomal protein S19 OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P++++D MVGHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKALESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ERWCT (30S ribosomal protein S19 OS=Erwinia carotovora subsp. atroseptica GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P++++D MVGHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_BACSK (30S ribosomal protein S19 OS=Bacillus clausii (strain KSM-K16) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.427e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV  HL++K++ LN   +K+++ TWSR STI P  +GHT A+++GR+H+P+Y+++ MVGHKLGEFAPT  ++GHA  D ++RR
Sbjct:    3 RSLKKGPFVDGHLMKKVEALNATNDKKVVKTWSRRSTIFPDFIGHTFAVYDGRKHVPVYVSEDMVGHKLGEFAPTRTYKGHAA-DKKTRR 91          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_THESQ (30S ribosomal protein S19 OS=Thermotoga sp. (strain RQ2) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RS KK P+V   LL KI KLN   EK++I TWSRAS IIP MVGHTIA++NG +H+P+YIT+ M+GH+LGEFAPT  F GHA
Sbjct:    3 RSSKKGPYVDKKLLEKIRKLNETGEKKVIKTWSRASMIIPEMVGHTIAVYNGMKHIPVYITENMIGHRLGEFAPTRRFGGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_THEP1 (30S ribosomal protein S19 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RS KK P+V   LL KI KLN   EK++I TWSRAS IIP MVGHTIA++NG +H+P+YIT+ M+GH+LGEFAPT  F GHA
Sbjct:    3 RSSKKGPYVDKKLLEKIRKLNETGEKKVIKTWSRASMIIPEMVGHTIAVYNGMKHIPVYITENMIGHRLGEFAPTRRFGGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_THENN (30S ribosomal protein S19 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RS KK P+V   LL KI KLN   EK++I TWSRAS IIP MVGHTIA++NG +H+P+YIT+ M+GH+LGEFAPT  F GHA
Sbjct:    3 RSKKKGPYVDRKLLEKIRKLNETGEKKVIKTWSRASMIIPEMVGHTIAVYNGMKHIPVYITENMIGHRLGEFAPTRRFGGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_THEMA (30S ribosomal protein S19 OS=Thermotoga maritima GN=rpsS PE=3 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 53/82 (64.63%), Postives = 64/82 (78.05%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RS KK P+V   LL KI KLN   EK++I TWSRAS IIP MVGHTIA++NG +H+P+YIT+ M+GH+LGEFAPT  F GHA
Sbjct:    3 RSRKKGPYVDRKLLEKIRKLNETGEKKVIKTWSRASMIIPEMVGHTIAVYNGMKHIPVYITENMIGHRLGEFAPTRRFGGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_STRZT (30S ribosomal protein S19 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_STRZP (30S ribosomal protein S19 OS=Streptococcus pneumoniae (strain P1031) GN=rpsS PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.864e-25
Identity = 49/90 (54.44%), Postives = 71/90 (78.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV  HL++K++      +K++I TWSR STI P+ +G+TIA+++GR+H+P+YI + MVGHKLGEFAPT  ++GHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQANDEKKKVIKTWSRRSTIFPSFIGYTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYKGHAADDKKTRR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_PECCP1.427e-2555.5630S ribosomal protein S19 OS=Pectobacterium caroto... [more]
RS19_ERWT91.427e-2555.5630S ribosomal protein S19 OS=Erwinia tasmaniensis ... [more]
RS19_ERWCT1.427e-2555.5630S ribosomal protein S19 OS=Erwinia carotovora su... [more]
RS19_BACSK1.427e-2554.4430S ribosomal protein S19 OS=Bacillus clausii (str... [more]
RS19_THESQ1.864e-2564.6330S ribosomal protein S19 OS=Thermotoga sp. (strai... [more]
RS19_THEP11.864e-2564.6330S ribosomal protein S19 OS=Thermotoga petrophila... [more]
RS19_THENN1.864e-2564.6330S ribosomal protein S19 OS=Thermotoga neapolitan... [more]
RS19_THEMA1.864e-2564.6330S ribosomal protein S19 OS=Thermotoga maritima G... [more]
RS19_STRZT1.864e-2554.4430S ribosomal protein S19 OS=Streptococcus pneumon... [more]
RS19_STRZP1.864e-2554.4430S ribosomal protein S19 OS=Streptococcus pneumon... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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