CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_KLEP7 (30S ribosomal protein S19 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P++++D MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_KLEP3 (30S ribosomal protein S19 OS=Klebsiella pneumoniae (strain 342) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 49/90 (54.44%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ + TWSR STI P M+G TIA+HNGR+H+P++++D MVGHKLGEFAPT  +RGHA +    ++
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAES2 (30S ribosomal protein S19 OS=Haemophilus somnus (strain 2336) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAES1 (30S ribosomal protein S19 OS=Haemophilus somnus (strain 129Pt) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEPS (30S ribosomal protein S19 OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEIN (30S ribosomal protein S19 OS=Haemophilus influenzae GN=rpsS PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEIG (30S ribosomal protein S19 OS=Haemophilus influenzae (strain PittGG) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEIE (30S ribosomal protein S19 OS=Haemophilus influenzae (strain PittEE) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEI8 (30S ribosomal protein S19 OS=Haemophilus influenzae (strain 86-028NP) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_HAEDU (30S ribosomal protein S19 OS=Haemophilus ducreyi GN=rpsS PE=3 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 3.179e-25
Identity = 50/82 (60.98%), Postives = 66/82 (80.49%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA 335
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIP+M+G TIA+HNGR+H+P+Y++D M+GHKLGEFAPT  +RGHA
Sbjct:    3 RSLKKGPFLDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPSMIGLTIAVHNGRQHVPVYVSDEMIGHKLGEFAPTRTYRGHA 84          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_KLEP73.179e-2554.4430S ribosomal protein S19 OS=Klebsiella pneumoniae... [more]
RS19_KLEP33.179e-2554.4430S ribosomal protein S19 OS=Klebsiella pneumoniae... [more]
RS19_HAES23.179e-2560.9830S ribosomal protein S19 OS=Haemophilus somnus (s... [more]
RS19_HAES13.179e-2560.9830S ribosomal protein S19 OS=Haemophilus somnus (s... [more]
RS19_HAEPS3.179e-2560.9830S ribosomal protein S19 OS=Haemophilus parasuis ... [more]
RS19_HAEIN3.179e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]
RS19_HAEIG3.179e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]
RS19_HAEIE3.179e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]
RS19_HAEI83.179e-2560.9830S ribosomal protein S19 OS=Haemophilus influenza... [more]
RS19_HAEDU3.179e-2560.9830S ribosomal protein S19 OS=Haemophilus ducreyi G... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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