CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_LACLS (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV  HL++K++       K +I TWSR STI P  VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQTNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_LACLM (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PFV  HL++K++       K +I TWSR STI P  VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT  +RGHA +D ++RR
Sbjct:    3 RSLKKGPFVDEHLMKKVEAQTNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBM (30S ribosomal protein S19 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RS+KK P++   LL++I+++N   EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF  T  +RGH     +S R
Sbjct:    1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBL (30S ribosomal protein S19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RS+KK P++   LL++I+++N   EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF  T  +RGH     +S R
Sbjct:    1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBK (30S ribosomal protein S19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RS+KK P++   LL++I+++N   EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF  T  +RGH     +S R
Sbjct:    1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBJ (30S ribosomal protein S19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RS+KK P++   LL++I+++N   EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF  T  +RGH     +S R
Sbjct:    1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOB6 (30S ribosomal protein S19 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RS+KK P++   LL++I+++N   EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF  T  +RGH     +S R
Sbjct:    1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CHLSY (30S ribosomal protein S19 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA--KNDNRSR 356
            ++RS KK P+V   LL KI+ +N   EK +I TWSR STI P M+GHTIA+H+GR H+P+YIT+ MVGHKLGEFAPT  FRGH   K D R +
Sbjct:    1 MSRSSKKGPYVDIKLLDKIEAMNKANEKRVIRTWSRDSTIFPQMIGHTIAVHDGRRHVPVYITENMVGHKLGEFAPTRFFRGHGGKKADKRGK 93          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CHLAA (30S ribosomal protein S19 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpsS PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA--KNDNRSR 356
            ++RS KK P+V   LL KI+ +N   EK +I TWSR STI P M+GHTIA+H+GR H+P+YIT+ MVGHKLGEFAPT  FRGH   K D R +
Sbjct:    1 MSRSSKKGPYVDIKLLDKIEAMNKANEKRVIRTWSRDSTIFPQMIGHTIAVHDGRRHVPVYITENMVGHKLGEFAPTRFFRGHGGKKADKRGK 93          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ALISL (30S ribosomal protein S19 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsS PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLKK PF+  HLL+K++K     +K+ I TWSR S IIPTM+  TIA+HNGR+H+P+++T+ M+GHKLGEFAPT  +RGHA +    +R
Sbjct:    3 RSLKKGPFIDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPTMINLTIAVHNGRQHVPVFVTEDMIGHKLGEFAPTRTYRGHAADKKAKKR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS19_LACLS4.152e-2555.5630S ribosomal protein S19 OS=Lactococcus lactis su... [more]
RS19_LACLM4.152e-2555.5630S ribosomal protein S19 OS=Lactococcus lactis su... [more]
RS19_CLOBM4.152e-2552.1730S ribosomal protein S19 OS=Clostridium botulinum... [more]
RS19_CLOBL4.152e-2552.1730S ribosomal protein S19 OS=Clostridium botulinum... [more]
RS19_CLOBK4.152e-2552.1730S ribosomal protein S19 OS=Clostridium botulinum... [more]
RS19_CLOBJ4.152e-2552.1730S ribosomal protein S19 OS=Clostridium botulinum... [more]
RS19_CLOB64.152e-2552.1730S ribosomal protein S19 OS=Clostridium botulinum... [more]
RS19_CHLSY4.152e-2559.1430S ribosomal protein S19 OS=Chloroflexus aurantia... [more]
RS19_CHLAA4.152e-2559.1430S ribosomal protein S19 OS=Chloroflexus aurantia... [more]
RS19_ALISL4.152e-2555.5630S ribosomal protein S19 OS=Aliivibrio salmonicid... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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