CB417417
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_LACLS (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 3 Query: 90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 RSLKK PFV HL++K++ K +I TWSR STI P VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT +RGHA +D ++RR Sbjct: 3 RSLKKGPFVDEHLMKKVEAQTNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_LACLM (30S ribosomal protein S19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 50/90 (55.56%), Postives = 67/90 (74.44%), Query Frame = 3 Query: 90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 RSLKK PFV HL++K++ K +I TWSR STI P VG TIA+++GR+H+P+Y+ + MVGHKLGEFAPT +RGHA +D ++RR Sbjct: 3 RSLKKGPFVDEHLMKKVEAQTNAERKSVIKTWSRRSTIFPNFVGLTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAADDKKTRR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBM (30S ribosomal protein S19 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 ++RS+KK P++ LL++I+++N EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF T +RGH +S R Sbjct: 1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBL (30S ribosomal protein S19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 ++RS+KK P++ LL++I+++N EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF T +RGH +S R Sbjct: 1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBK (30S ribosomal protein S19 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 ++RS+KK P++ LL++I+++N EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF T +RGH +S R Sbjct: 1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOBJ (30S ribosomal protein S19 OS=Clostridium botulinum (strain Kyoto / Type A2) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 ++RS+KK P++ LL++I+++N EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF T +RGH +S R Sbjct: 1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CLOB6 (30S ribosomal protein S19 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 48/92 (52.17%), Postives = 71/92 (77.17%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 ++RS+KK P++ LL++I+++N EK+++ TWSR+STI P M+GHTIA+H+GR+H+P+YIT+ MVGHKLGEF T +RGH +S R Sbjct: 1 MSRSVKKGPYIQEVLLKRINEMNKNGEKKVLKTWSRSSTIFPQMIGHTIAVHDGRKHVPVYITEDMVGHKLGEFVLTRTYRGHDDKSEKSSR 92
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CHLSY (30S ribosomal protein S19 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA--KNDNRSR 356 ++RS KK P+V LL KI+ +N EK +I TWSR STI P M+GHTIA+H+GR H+P+YIT+ MVGHKLGEFAPT FRGH K D R + Sbjct: 1 MSRSSKKGPYVDIKLLDKIEAMNKANEKRVIRTWSRDSTIFPQMIGHTIAVHDGRRHVPVYITENMVGHKLGEFAPTRFFRGHGGKKADKRGK 93
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_CHLAA (30S ribosomal protein S19 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rpsS PE=3 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 3 Query: 84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHA--KNDNRSR 356 ++RS KK P+V LL KI+ +N EK +I TWSR STI P M+GHTIA+H+GR H+P+YIT+ MVGHKLGEFAPT FRGH K D R + Sbjct: 1 MSRSSKKGPYVDIKLLDKIEAMNKANEKRVIRTWSRDSTIFPQMIGHTIAVHDGRRHVPVYITENMVGHKLGEFAPTRFFRGHGGKKADKRGK 93
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RS19_ALISL (30S ribosomal protein S19 OS=Aliivibrio salmonicida (strain LFI1238) GN=rpsS PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25 Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 3 Query: 90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359 RSLKK PF+ HLL+K++K +K+ I TWSR S IIPTM+ TIA+HNGR+H+P+++T+ M+GHKLGEFAPT +RGHA + +R Sbjct: 3 RSLKKGPFIDLHLLKKVEKAVESGDKKPIKTWSRRSMIIPTMINLTIAVHNGRQHVPVFVTEDMIGHKLGEFAPTRTYRGHAADKKAKKR 92 The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bpback to top |