CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_IPOPU (30S ribosomal protein S19, chloroplastic OS=Ipomoea purpurea GN=rps19 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 9.206e-41
Identity = 78/92 (84.78%), Postives = 84/92 (91.30%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLL+KIDKLN KAEKEII TWSR STIIPTM+GHTIAIHNG+EHLPIYITD MVGHKLGEFA T NFRGH K+DN+SRR
Sbjct:    1 MARSLKKNPFVANHLLKKIDKLNRKAEKEIIRTWSRGSTIIPTMIGHTIAIHNGKEHLPIYITDHMVGHKLGEFASTFNFRGHTKSDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CERDE (30S ribosomal protein S19, chloroplastic OS=Ceratophyllum demersum GN=rps19 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.202e-40
Identity = 75/92 (81.52%), Postives = 86/92 (93.48%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVA HLL K++KLN + EKEII+TWSRASTIIPTMVGHTIA+HNG+EHLP++ITDRMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MARSLKKNPFVAFHLLEKVEKLNIRKEKEIIVTWSRASTIIPTMVGHTIAVHNGKEHLPVFITDRMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_VITVI (30S ribosomal protein S19, chloroplastic OS=Vitis vinifera GN=rps19 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.051e-40
Identity = 76/92 (82.61%), Postives = 84/92 (91.30%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPF+A HLLRKI  LNT  EKEII+TWSR STIIPTM+GHTIA+HNG+EH PIYITDRMVGHKLGEF+ T+NFRGHAKNDNRSRR
Sbjct:    1 MTRSLKKNPFIAKHLLRKIAMLNTTWEKEIIVTWSRTSTIIPTMIGHTIAVHNGKEHFPIYITDRMVGHKLGEFSSTLNFRGHAKNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_NANDO (30S ribosomal protein S19, chloroplastic OS=Nandina domestica GN=rps19 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.051e-40
Identity = 76/92 (82.61%), Postives = 86/92 (93.48%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL KI+KLN +AEKEII+TWSRASTIIP M+GHTIAIHNG+EHLPIYIT+ MVGHKLGEFAPT+ FRGHA+ND +SRR
Sbjct:    1 MTRSLKKNPFVANHLLGKIEKLNMRAEKEIIVTWSRASTIIPIMIGHTIAIHNGKEHLPIYITESMVGHKLGEFAPTLTFRGHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CALFG (30S ribosomal protein S19, chloroplastic OS=Calycanthus floridus var. glaucus GN=rps19 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.051e-40
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL KI+KLN + EKE I+TWSRASTIIPTM+GHTIAIHNG+EHLPI+ITDRMVGHKLGEFAPT+ FRGHA+ D RSRR
Sbjct:    1 MTRSLKKNPFVANHLLAKIEKLNMREEKETIVTWSRASTIIPTMIGHTIAIHNGKEHLPIFITDRMVGHKLGEFAPTLTFRGHARTDTRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PHAAO (30S ribosomal protein S19, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps19 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFVANHLL +I+KLN + EKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+ F  HA+ND +SRR
Sbjct:    1 MTRSLKKNPFVANHLLGRIEKLNRREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTLTFVRHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_MARPO (30S ribosomal protein S19, chloroplastic OS=Marchantia polymorpha GN=rps19 PE=3 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 74/92 (80.43%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRS+KK PFVA+HLL+KI+ LN K EK+IIITWSRASTI+PTM+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT  FRGHAKND +SRR
Sbjct:    1 MTRSIKKGPFVADHLLKKIENLNLKKEKKIIITWSRASTIVPTMIGHTIAVHNGQEHLPIYITDRMVGHKLGEFAPTRTFRGHAKNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_AMBTC (30S ribosomal protein S19, chloroplastic OS=Amborella trichopoda GN=rps19 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.736e-39
Identity = 73/92 (79.35%), Postives = 87/92 (94.57%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            ++RSLKKNPFVAN+LL KI KLNT+ EKEII+TWSRASTIIPTM+GHTIAIHNG+EHLP+Y+TDRMVGHKLGEFAPT+ F+GHA+ND++ RR
Sbjct:    1 MSRSLKKNPFVANNLLLKIHKLNTREEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPVYVTDRMVGHKLGEFAPTLTFQGHARNDSKFRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_DRIGR (30S ribosomal protein S19, chloroplastic OS=Drimys granadensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.868e-39
Identity = 75/92 (81.52%), Postives = 84/92 (91.30%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKKNPFV NHLL KI+KLN + EKEII+TWSRASTIIPTM+GHTIAIHNG+ HLPIYI DRMVGHKLGEFAPT+ FRGHA+N+N SRR
Sbjct:    1 MTRSLKKNPFVDNHLLGKIEKLNMREEKEIIVTWSRASTIIPTMIGHTIAIHNGKAHLPIYIIDRMVGHKLGEFAPTLTFRGHARNNNVSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PEA (30S ribosomal protein S19, chloroplastic OS=Pisum sativum GN=rps19 PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 5.052e-39
Identity = 75/92 (81.52%), Postives = 83/92 (90.22%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRS KKNPFVANHLL+KI KLNTK EK II TWSR STIIP M+GHTIAIHNG+EHLP+YITDRMVGHKLGEF+PT+NF G AKNDN+SRR
Sbjct:    1 MTRSRKKNPFVANHLLKKIKKLNTKGEKAIIKTWSRKSTIIPIMIGHTIAIHNGKEHLPVYITDRMVGHKLGEFSPTLNFGGFAKNDNKSRR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_IPOPU9.206e-4184.7830S ribosomal protein S19, chloroplastic OS=Ipomoe... [more]
RR19_CERDE1.202e-4081.5230S ribosomal protein S19, chloroplastic OS=Cerato... [more]
RR19_VITVI2.051e-4082.6130S ribosomal protein S19, chloroplastic OS=Vitis ... [more]
RR19_NANDO2.051e-4082.6130S ribosomal protein S19, chloroplastic OS=Nandin... [more]
RR19_CALFG2.051e-4082.6130S ribosomal protein S19, chloroplastic OS=Calyca... [more]
RR19_PHAAO1.736e-3981.5230S ribosomal protein S19, chloroplastic OS=Phalae... [more]
RR19_MARPO1.736e-3980.4330S ribosomal protein S19, chloroplastic OS=Marcha... [more]
RR19_AMBTC1.736e-3979.3530S ribosomal protein S19, chloroplastic OS=Ambore... [more]
RR19_DRIGR3.868e-3981.5230S ribosomal protein S19, chloroplastic OS=Drimys... [more]
RR19_PEA5.052e-3981.5230S ribosomal protein S19, chloroplastic OS=Pisum ... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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