CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CYCTA (30S ribosomal protein S19, chloroplastic OS=Cycas taitungensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 5.052e-39
Identity = 74/92 (80.43%), Postives = 84/92 (91.30%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANH LRKI+ LN K EK+II+TWSRASTI+P M+GHTIA+HNG+EHLPIYITDRMVGHKLGEFAPT+  RGHAK+DNRSRR
Sbjct:    1 MARSLKKNPFVANHSLRKIENLNIKKEKKIIVTWSRASTIVPAMIGHTIAVHNGKEHLPIYITDRMVGHKLGEFAPTLIPRGHAKSDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_LEMMI (30S ribosomal protein S19, chloroplastic OS=Lemna minor GN=rps19 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.617e-39
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRS+KKNPFVANHLL KI+KLN + EKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT +F  HA+ND +SRR
Sbjct:    1 MTRSIKKNPFVANHLLVKIEKLNMRQEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTRSFGKHARNDIKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CUSEX (30S ribosomal protein S19, plastid OS=Cuscuta exaltata GN=rps19 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.470e-38
Identity = 76/92 (82.61%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVA++L +KIDKLN KAEKEIIITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T NFRGHAK+DNRSRR
Sbjct:    1 MARSLKKNPFVADNLFKKIDKLNIKAEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFASTFNFRGHAKSDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PHYPA (30S ribosomal protein S19, chloroplastic OS=Physcomitrella patens GN=rps19 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.920e-38
Identity = 72/92 (78.26%), Postives = 85/92 (92.39%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKK PFVA+HLL+KI+ LN K EK+IIITWSRASTI+PTM+GHTIA++NG+EHLPIYITDRM+GHKLGEFAPT NFRGH K+D +SRR
Sbjct:    1 MTRSLKKGPFVADHLLKKIEDLNLKKEKKIIITWSRASTIVPTMIGHTIAVYNGQEHLPIYITDRMIGHKLGEFAPTRNFRGHTKSDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PINKO (30S ribosomal protein S19, chloroplastic OS=Pinus koraiensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.276e-38
Identity = 71/92 (77.17%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANHLLRKI  LN K EK+II+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHLLRKIKNLNIKKEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_NYMAL (30S ribosomal protein S19, chloroplastic OS=Nymphaea alba GN=rps19 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.585e-38
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RS KKNPFVANHLL KI+KLN   E+ II+TWSRASTII  MVGHTIA+HNG+EHLPIYIT+RMVGHKLGEFAPT+ FRGHA+NDNRSRR
Sbjct:    1 MARSSKKNPFVANHLLSKIEKLNKAEERSIIVTWSRASTIIFAMVGHTIAVHNGKEHLPIYITERMVGHKLGEFAPTLTFRGHARNDNRSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PICAB (30S ribosomal protein S19, chloroplastic OS=Picea abies GN=rps19 PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.625e-37
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANH LRKI  LN K EK+II+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHSLRKIQNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_PINTH (30S ribosomal protein S19, chloroplastic OS=Pinus thunbergii GN=rps19 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37
Identity = 70/92 (76.09%), Postives = 81/92 (88.04%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVANH LRKI  LN K EK+II+TWSRAS I+P M+GHTIA+HNGREHLPIY+TDRMV HKLGEFAPT+ F+GHA+ND +SRR
Sbjct:    1 MARSLKKNPFVANHSLRKIKNLNIKEEKKIIVTWSRASVIVPAMIGHTIAVHNGREHLPIYVTDRMVDHKLGEFAPTLLFQGHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CUSGR (30S ribosomal protein S19, plastid OS=Cuscuta gronovii GN=rps19 PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.772e-37
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +T  LKKNPFVAN+LL+KI+KLN KA+KEIIITWSR STIIP M+GHTIAIHNG+EHLPIYI D MVGHKLGEFA T+NFRGH K DN+SRR
Sbjct:    1 MTYLLKKNPFVANNLLKKINKLNRKAQKEIIITWSRGSTIIPIMIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKGDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CUSRE (30S ribosomal protein S19, plastid OS=Cuscuta reflexa GN=rps19 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 75/92 (81.52%), Postives = 80/92 (86.96%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKKNPFVA +LL+KI KLN K EKEIIITWSR STIIP MVGHTIAIH G+EHLPIYI D MVGHKLGEFA T+NFRGHAK DNRSRR
Sbjct:    1 MARSLKKNPFVAKNLLKKIYKLNIKTEKEIIITWSRGSTIIPIMVGHTIAIHTGKEHLPIYIMDHMVGHKLGEFAFTLNFRGHAKTDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CYCTA5.052e-3980.4330S ribosomal protein S19, chloroplastic OS=Cycas ... [more]
RR19_LEMMI8.617e-3981.5230S ribosomal protein S19, chloroplastic OS=Lemna ... [more]
RR19_CUSEX1.470e-3882.6130S ribosomal protein S19, plastid OS=Cuscuta exal... [more]
RR19_PHYPA1.920e-3878.2630S ribosomal protein S19, chloroplastic OS=Physco... [more]
RR19_PINKO4.276e-3877.1730S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_NYMAL5.585e-3879.3530S ribosomal protein S19, chloroplastic OS=Nympha... [more]
RR19_PICAB1.625e-3776.0930S ribosomal protein S19, chloroplastic OS=Picea ... [more]
RR19_PINTH2.122e-3776.0930S ribosomal protein S19, chloroplastic OS=Pinus ... [more]
RR19_CUSGR2.772e-3779.3530S ribosomal protein S19, plastid OS=Cuscuta gron... [more]
RR19_CUSRE3.620e-3781.5230S ribosomal protein S19, plastid OS=Cuscuta refl... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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