CB417417

Overview
NameCB417417
Unique NameCB417417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Mature peel (flavedo) cDNA subtraction librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CUSOB (30S ribosomal protein S19, plastid OS=Cuscuta obtusiflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 73/92 (79.35%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +T S KKNPFVAN+LL+KI+KLN KA+KEIIITWSR STIIP M+GHTIAIHNG+EHLPIYI D MVGHKLGEFA T+NFRGH K DN+SRR
Sbjct:    1 MTYSRKKNPFVANNLLKKINKLNRKAKKEIIITWSRGSTIIPIMIGHTIAIHNGKEHLPIYIMDDMVGHKLGEFAATLNFRGHEKGDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_EPIVI (Plastid 30S ribosomal protein S19 OS=Epifagus virginiana GN=rps19 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.175e-37
Identity = 71/89 (79.78%), Postives = 80/89 (89.89%), Query Frame = 3
Query:   93 SLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +LKKN FVANHL  KI+KLN K +KEII+TWSRASTIIP M+GH I+IHNG+EHLPIYITD MVGHKLGEF PT+NFRGHAK+DNRSRR
Sbjct:    6 TLKKNLFVANHLRAKINKLNNKKKKEIIVTWSRASTIIPIMIGHMISIHNGKEHLPIYITDHMVGHKLGEFVPTLNFRGHAKSDNRSRR 94          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_HUPLU (30S ribosomal protein S19, chloroplastic OS=Huperzia lucidula GN=rps19 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 8.065e-37
Identity = 70/92 (76.09%), Postives = 82/92 (89.13%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSL+K PFVA HLL+KI+ LN + EK+II+TWSRASTI+P MVGHTIA+HNG+EHLPIY+TDRMVGHKLGEFAPT  FRGHAKND +SRR
Sbjct:    1 MARSLEKGPFVAYHLLKKIENLNVEEEKKIIVTWSRASTIVPIMVGHTIAVHNGQEHLPIYVTDRMVGHKLGEFAPTRIFRGHAKNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_ANEMR (30S ribosomal protein S19, plastid OS=Aneura mirabilis GN=rps19 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.376e-36
Identity = 69/92 (75.00%), Postives = 81/92 (88.04%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSL K PFVANHLL++I+ LN    +E+++TWSRASTI+P M+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT  FRGHA+ND +SRR
Sbjct:    1 MTRSLGKGPFVANHLLKEIEILNFGGSEEVVVTWSRASTIVPVMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTRTFRGHARNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_STAPU (30S ribosomal protein S19, chloroplastic OS=Staurastrum punctulatum GN=rps19 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.065e-36
Identity = 68/92 (73.91%), Postives = 81/92 (88.04%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            + RSLKK PFVA+HLL+KI+ LN + EK++IITWSRAS I+P M+GHTIA+HNGREHLP+YITD MVGHKLGEFAPT  FRGHAK+D +SRR
Sbjct:    1 MARSLKKGPFVADHLLKKIESLNAQGEKKVIITWSRASIIVPGMIGHTIAVHNGREHLPVYITDLMVGHKLGEFAPTRTFRGHAKSDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_CHAVU (30S ribosomal protein S19, chloroplastic OS=Chara vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.003e-36
Identity = 67/92 (72.83%), Postives = 83/92 (90.22%), Query Frame = 3
Query:   84 VTRSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            +TRSLKK PF+ANHLL+K+  LN +A+K++I+TWSR STIIP+M+GHTIAIHNGREH+PI+ITD+MVGHKLGEF+ T  FRGHAKND +SRR
Sbjct:    1 MTRSLKKGPFIANHLLKKVHILNLEAQKKVILTWSRGSTIIPSMIGHTIAIHNGREHIPIFITDQMVGHKLGEFSATRTFRGHAKNDKKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_OENPA (30S ribosomal protein S19, chloroplastic OS=Oenothera parviflora GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLK NPFVAN LLRK++KLN + +K +I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:    3 RSLKNNPFVANPLLRKMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_OENGL (30S ribosomal protein S19, chloroplastic OS=Oenothera glazioviana GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLK NPFVAN LLRK++KLN + +K +I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:    3 RSLKNNPFVANPLLRKMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_OENEH (30S ribosomal protein S19, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps19 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLK NPFVAN LLRK++KLN + +K +I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:    3 RSLKNNPFVANPLLRKMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
BLAST of CB417417 vs. ExPASy Swiss-Prot
Match: RR19_OENBI (30S ribosomal protein S19, chloroplastic OS=Oenothera biennis GN=rps19 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.227e-36
Identity = 72/90 (80.00%), Postives = 80/90 (88.89%), Query Frame = 3
Query:   90 RSLKKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 359
            RSLK NPFVAN LLRK++KLN + +K +I TWSRASTII TM+GHTIAIHNG+EHLPIYITD MVGHKLGEFAPTINF  HAKNDN+SRR
Sbjct:    3 RSLKNNPFVANPLLRKMEKLNRREDKILIRTWSRASTIILTMIGHTIAIHNGKEHLPIYITDYMVGHKLGEFAPTINFHEHAKNDNKSRR 92          
The following BLAST results are available for this feature:
BLAST of CB417417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CUSOB3.620e-3779.3530S ribosomal protein S19, plastid OS=Cuscuta obtu... [more]
RR19_EPIVI6.175e-3779.78Plastid 30S ribosomal protein S19 OS=Epifagus virg... [more]
RR19_HUPLU8.065e-3776.0930S ribosomal protein S19, chloroplastic OS=Huperz... [more]
RR19_ANEMR1.376e-3675.0030S ribosomal protein S19, plastid OS=Aneura mirab... [more]
RR19_STAPU3.065e-3673.9130S ribosomal protein S19, chloroplastic OS=Staura... [more]
RR19_CHAVU4.003e-3672.8330S ribosomal protein S19, chloroplastic OS=Chara ... [more]
RR19_OENPA5.227e-3680.0030S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENGL5.227e-3680.0030S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENEH5.227e-3680.0030S ribosomal protein S19, chloroplastic OS=Oenoth... [more]
RR19_OENBI5.227e-3680.0030S ribosomal protein S19, chloroplastic OS=Oenoth... [more]

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Properties
Property NameValue
Genbank descriptionEST0517 Mature peel (flavedo) cDNA subtraction library Citrus sinensis cDNA clone 6P315 similar to ribosomal protein S19 (NP_077750), mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB417417 ID=CB417417; Name=CB417417; organism=Citrus sinensis; type=EST; length=582bp
ACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTTTTACAATTTACA
AAAAAAAAAGAAAAAAATAGGAGTTAATTAACTGTGACACGTTCACTAAA
AAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGCTTA
ATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCTACC
ATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAGGGA
GCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGGGAG
AATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAATAGA
TCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAACCTT
ATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCAACA
TATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTCGTG
GACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTATCGA
GCATGTTATCCCATTTTAAAATTGGTTTATTC
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