CB610479

Overview
NameCB610479
Unique NameCB610479
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CB610479_ssr315 microsatellite CB610479_ssr315:315..324. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5659 contig Csv1_Contig5659:543..1163. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKO_ARATH (CBL-interacting serine/threonine-protein kinase 24 OS=Arabidopsis thaliana GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 9.905e-15
Identity = 34/70 (48.57%), Postives = 53/70 (75.71%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKS 214
            GF     NFK +L+G  + + G L+V  EI+EVAPSL+MV++RK+ G+TLE+HKFYK L + L++++W++
Sbjct:  362 GFKSHTRNFKTRLEGLSSIKAGQLAVVIEIYEVAPSLFMVDVRKAAGETLEYHKFYKKLCSKLENIIWRA 431          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKO_ORYSJ (CBL-interacting protein kinase 24 OS=Oryza sativa subsp. japonica GN=CIPK24 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.207e-14
Identity = 32/69 (46.38%), Postives = 49/69 (71.01%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWK 211
            G  V   N+KL+L+G  + R    +V  ++FEVAPSL+MV++RK  GDTLE+H+FYKNL   ++ ++W+
Sbjct:  369 GLKVHSQNYKLRLEGVSSNRMSPFAVVLQVFEVAPSLFMVDVRKVAGDTLEYHRFYKNLCNKMESIIWR 437          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK5_ORYSJ (CBL-interacting protein kinase 5 OS=Oryza sativa subsp. japonica GN=CIPK5 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.385e-14
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 2
Query:    8 FDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKF-YKNLSTGLKDVVWKSGDE 223
            F VKK +  +KLQG K GRKG L++  EIFEV PS ++VE++KS GDTLE+ KF  K L   L+D+ W    E
Sbjct:  367 FKVKKQDGLVKLQGSKEGRKGQLAIDAEIFEVTPSFFVVEVKKSAGDTLEYEKFCNKGLRPSLRDICWDGQSE 439          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKK_ARATH (CBL-interacting serine/threonine-protein kinase 20 OS=Arabidopsis thaliana GN=CIPK20 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.211e-12
Identity = 33/69 (47.83%), Postives = 51/69 (73.91%), Query Frame = 2
Query:    8 FDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFY-KNLSTGLKDVVWK 211
            F++ K++  +K++ ++ GRKGHL++  EIFEV  S +MVE +KSGGDT+E+ +F  + L   LKD+VWK
Sbjct:  354 FNLTKSDVGVKMEDKREGRKGHLAIDVEIFEVTNSFHMVEFKKSGGDTMEYKQFCDRELRPSLKDIVWK 422          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK6_ARATH (CBL-interacting serine/threonine-protein kinase 6 OS=Arabidopsis thaliana GN=CIPK6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 33/70 (47.14%), Postives = 49/70 (70.00%), Query Frame = 2
Query:    8 FDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKN-LSTGLKDVVWKS 214
            FDV+K+  +++++G++ GRKG L+V  EIF VAPS  +VE++K  GDTLE++ F    L   LKD+ W S
Sbjct:  369 FDVRKSESRVRIEGKQNGRKGKLAVEAEIFAVAPSFVVVEVKKDHGDTLEYNNFCSTALRPALKDIFWTS 438          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK8_ORYSJ (CBL-interacting protein kinase 8 OS=Oryza sativa subsp. japonica GN=CIPK8 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 27/68 (39.71%), Postives = 47/68 (69.12%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVW 208
            G+     N+K++++G    +  HL+V  EIFEVAPS++M+EL+++ GDT +++KF  N  + L D++W
Sbjct:  362 GYKTHIRNYKMRVEGLNANKTSHLAVMLEIFEVAPSIFMIELQRAAGDTSDYNKFINNYCSKLDDIIW 429          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKA_ORYSJ (CBL-interacting protein kinase 10 OS=Oryza sativa subsp. japonica GN=CIPK10 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 2
Query:   14 VKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVW 208
            +KKN   LK++G K GRKG +S+  EIF++ P  ++VE  K  GDTLE+ K  + +   LKD+VW
Sbjct:  371 LKKNGGLLKMEGSKPGRKGVMSINAEIFQITPDFHLVEFTKINGDTLEYQKVKQEMRPALKDIVW 435          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPK8_ARATH (CBL-interacting serine/threonine-protein kinase 8 OS=Arabidopsis thaliana GN=CIPK8 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 28/75 (37.33%), Postives = 47/75 (62.67%), Query Frame = 2
Query:    5 GFDVKKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKFYKNLSTGLKDVVWKSGDETI 229
            GF     N+K++++G    +  H SV  E+F+VAPS+ MV+++ + GD  E+ KFYK   + L D++WK  D ++
Sbjct:  359 GFKTHIRNYKMRVEGLSANKTSHFSVILEVFKVAPSILMVDIQNAAGDAEEYLKFYKTFCSKLDDIIWKPPDASM 433          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKK_ORYSJ (CBL-interacting protein kinase 20 OS=Oryza sativa subsp. japonica GN=CIPK20 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.087e-11
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 2
Query:   17 KKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEFHKF-YKNLSTGLKDVVWKS 214
            +++   +KLQG K GRKG L++  EIFEV+PS Y+VE++K+ GDTLE+  F  ++L   L D+ W S
Sbjct:  375 EEDGMAVKLQGWKEGRKGQLAIDAEIFEVSPSCYVVEVKKTAGDTLEYQAFCNRDLRPSLNDICWTS 441          
BLAST of CB610479 vs. ExPASy Swiss-Prot
Match: CIPKI_ORYSJ (CBL-interacting protein kinase 18 OS=Oryza sativa subsp. japonica GN=CIPK18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.644e-11
Identity = 31/65 (47.69%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   17 KKNNFKLKLQGEKTGRKGHLSVATEIFEVAPSLYMVELRKSGGDTLEF-HKFYKNLSTGLKDVVW 208
            KK    LK++G   GRKG L++  EIFEV PS ++VE++K+ GDTLE+ H + +++   LKD+VW
Sbjct:  376 KKEGGVLKMEGASEGRKGVLAIDAEIFEVTPSFHLVEIKKNNGDTLEYQHLWKEDMKPALKDIVW 440          
The following BLAST results are available for this feature:
BLAST of CB610479 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CIPKO_ARATH9.905e-1548.57CBL-interacting serine/threonine-protein kinase 24... [more]
CIPKO_ORYSJ2.207e-1446.38CBL-interacting protein kinase 24 OS=Oryza sativa ... [more]
CIPK5_ORYSJ8.385e-1452.05CBL-interacting protein kinase 5 OS=Oryza sativa s... [more]
CIPKK_ARATH1.211e-1247.83CBL-interacting serine/threonine-protein kinase 20... [more]
CIPK6_ARATH7.848e-1247.14CBL-interacting serine/threonine-protein kinase 6 ... [more]
CIPK8_ORYSJ1.339e-1139.71CBL-interacting protein kinase 8 OS=Oryza sativa s... [more]
CIPKA_ORYSJ1.748e-1146.15CBL-interacting protein kinase 10 OS=Oryza sativa ... [more]
CIPK8_ARATH2.982e-1137.33CBL-interacting serine/threonine-protein kinase 8 ... [more]
CIPKK_ORYSJ5.087e-1147.76CBL-interacting protein kinase 20 OS=Oryza sativa ... [more]
CIPKI_ORYSJ6.644e-1147.69CBL-interacting protein kinase 18 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_H09 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_H09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610479 ID=CB610479; Name=CB610479; organism=Citrus sinensis; type=EST; length=621bp
GGGGGGTTTTGATGTGAAGAAAAATAATTTCAAGTTGAAGCTTCAAGGGG
AAAAAACTGGACGCAAGGGTCATTTATCTGTTGCAACAGAGATTTTTGAG
GTGGCCCCTTCACTTTACATGGTTGAGCTTCGAAAATCTGGAGGAGATAC
CTTAGAATTTCACAAGTTTTACAAAAACCTTTCGACTGGGCTGAAAGATG
TTGTTTGGAAATCAGGAGATGAAACAATTGTTGAAGGATCTGCAGTCGCT
GGTGGCGCAGGGTCTCAATAGCGGATTTCCTTTCATGACTTGCACTGCTG
AATATCTCCAGCAAATATATATATTGCTTTTGCACCATTGTATCTCAGCT
TTGTATTTTATCCTCTAGGCCATGTGTTTCCTTCATTTGTGATTCAGAAC
TCACTTCTCGTGTACCTTGGTTTGGCTTTTGTGTGGTTTCAGACTTCCAG
TTGTATCATCTCAACGGATATTGAACGTAGTCAATTACCTGCAAATAATC
AAAAAGACTCTCAGTCCACTGTCATTTTCATTTTGTTTGTTTTTAGTGAC
TTGTCTATGGACCAGAAAATTCAATAAAAATAATATATTACGAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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