CB610489

Overview
NameCB610489
Unique NameCB610489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12501 contig Csv1_Contig12501:1254..1997. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_HELPJ (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Helicobacter pylori J99 GN=gpmI PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.943e-12
Identity = 51/166 (30.72%), Postives = 80/166 (48.19%), Query Frame = 3
Query:    9 TFNVQPKMKALEIAERAKKAILSRRFHQVR-------VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSL 485
            T++++P+M A        K +      Q+R       VN  N DMVGHTG+ EA++ A +A D  +  I+   +++    L+T+DHGN E M           KD N   LT+HT   V   + G G+         + NG L N+A++ + L G +AP+  +  L
Sbjct:  351 TYDLKPEMSA--------KGVTLAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEILSLAKELDYAMLLTSDHGNCERM-----------KDENQNPLTNHTAGSVYCFVLGNGV-------KSIKNGALNNIASSVLKLMGIKAPATMDEPL 490          
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_UREU1 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.185e-11
Identity = 49/160 (30.63%), Postives = 77/160 (48.12%), Query Frame = 3
Query:    9 TFNVQPKMKALEIAERAKKAILSRRF-HQVR-VNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPS 482
            T+++ P+M A  I     K I+   F H V  VN  N DMVGH+G+++ T+ A  + D  ++ + D  +K  G+ ++T DHGNAE M+           D N Q++TSH++  V   I    +  D           LAN+A T +     + P +   S
Sbjct:  355 TYDLCPQMSASLIT----KTIIDHYFDHDVFIVNYANPDMVGHSGNMKQTIQAILSVDSEIQKLYDFFKKNNGVLMITGDHGNAETMI-----------DANGQIITSHSINDVWFIITDNNIVFD-----QTQKFSLANIAPTILEYLNIKKPIEMAAS 494          
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_PARD8 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=gpmI PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.465e-11
Identity = 46/154 (29.87%), Postives = 79/154 (51.30%), Query Frame = 3
Query:    9 TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 470
            T++++P+M A E+ ++   AI +++F  + VN  N DMVGHTG  +A   A    D  +   ++A +      ++ ADHGNA+  +  N+ G P          T+H+L PVP          D K    + +G LA+VA + +++ G + P +
Sbjct:  363 TYDLKPEMSAFEVKDKLVDAINTKKFDFIVVNYANGDMVGHTGIYKAIEKAVVTIDACLHDTVEAAKANDYEVIIIADHGNADHAL--NEDGTP---------NTAHSLNPVPFVYVTAN--KDAK----VEDGILADVAPSILHILGLKQPKE 499          
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_MYCMO (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma mobile GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 3
Query:   81 RFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYEPSLI 488
            ++  + +N  N DMVGHTG+++AT+ A +  D     I+ AIEK      +TADHGNAE  +  +++G P          T HT  PV + +    L         L +G LAN+A T ++      P +   SLI
Sbjct:  386 KYDVIILNYANPDMVGHTGNLKATIKALEFLDFQYGKILKAIEKTNHTLFITADHGNAE--ITEDENGNP---------ATKHTTSPVMLIVTDKNL--------KLNSGTLANIAPTILDYLKIPKPKNMLDSLI 502          
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_MYCH2 (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma hyopneumoniae (strain 232) GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.138e-11
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 3
Query:   24 PKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSDYE 476
            P+M A+EI ++  +  + +++  + +N  N DMVGHTGD++AT+ A +  D  +  I    E+    + +TADHGNAE           L +D N    T HT  PV +      +  D   +  L +G LAN+A T ++  G +   D +
Sbjct:  374 PQMSAVEITDKLLE--VGQKYDFIIMNFANPDMVGHTGDLKATIKAVEILDFQIGRICKWAEEKNFDFFITADHGNAE-----------LTEDENGNPSTKHTTFPVML------ISSDKTIK--LKSGKLANIAPTILDYLGLDKHPDMD 503          
BLAST of CB610489 vs. ExPASy Swiss-Prot
Match: GPMI_MYCGE (2,3-bisphosphoglycerate-independent phosphoglycerate mutase OS=Mycoplasma genitalium GN=gpmI PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.322e-11
Identity = 47/154 (30.52%), Postives = 70/154 (45.45%), Query Frame = 3
Query:    9 TFNVQPKMKALEIAERAKKAILSRRFHQVRVNLPNSDMVGHTGDIEATVVACKAADEAVKIIIDAIEKVGGIYLVTADHGNAEDMVKRNKSGEPLLKDGNIQVLTSHTLKPVPIAIGGPGLPDDVKFRTDLPNGGLANVAATFINLHGYEAPSD 470
            T+++ P+M    I +   + +    F    +N  N DMVGHTG+ +A + A +A D  +K I+D  +       +TADHGNAE M+           D N   +T HT+ PVP          +V F      G LAN+A T +       P +
Sbjct:  363 TYDLAPEMSCKAITDALLEKL--NNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIKRIVDFCKANQITMFLTADHGNAEVMI-----------DNNNNPVTKHTINPVPFVC----TDKNVNFN---QTGILANIAPTILEYLNLSKPKE 496          
The following BLAST results are available for this feature:
BLAST of CB610489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
GPMI_HELPJ4.943e-1230.722,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_UREU14.185e-1130.632,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_PARD85.465e-1129.872,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCMO7.138e-1133.092,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCH27.138e-1131.132,3-bisphosphoglycerate-independent phosphoglycera... [more]
GPMI_MYCGE9.322e-1130.522,3-bisphosphoglycerate-independent phosphoglycera... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IaF_F07 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IaF_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610489 ID=CB610489; Name=CB610489; organism=Citrus sinensis; type=EST; length=744bp
GGGGAATTACTTTCAATGTACAGCCCAAGATGAAGGCTTTGGAGATTGCT
GAAAGGGCAAAGAAGGCCATCCTTAGTCGCAGGTTCCACCAGGTGCGTGT
TAACCTACCAAATAGTGACATGGTGGGGCACACGGGAGATATTGAGGCAA
CAGTGGTGGCATGCAAGGCTGCTGATGAAGCTGTCAAGATAATCATTGAT
GCAATAGAGAAAGTTGGTGGAATATATCTTGTTACTGCAGATCATGGCAA
TGCTGAGGACATGGTCAAGAGGAACAAATCTGGGGAGCCTCTTCTTAAGG
ATGGCAATATTCAAGTGCTCACGTCTCACACTCTTAAACCCGTTCCCATT
GCAATCGGAGGTCCTGGACTGCCAGATGATGTCAAGTTCCGCACAGATCT
CCCTAATGGTGGGCTGGCCAATGTAGCAGCAACTTTTATCAATCTCCATG
GATATGAGGCGCCTAGTGACTACGAGCCAAGTCTTATTGAAGTAACTGAC
GACTGAGAGGTAACTGACGACTGGGCGAACAATGGATCGTCGCCTAGATT
TTATAACTCCGGAGGAATTCCGTTAAAACGTAAAACAATAAATTGAATTT
TGGGGTCTTGAATTCGATTTGATACGCGTGCTGTTTTTCAGCTTACATTT
CGATTGCTGTCTGTTGGAGGCAGACAGAACAATATGGCTCAAAATTTATT
TTAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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