CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRX1_SCHPO (Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1 PE=2 SV=3)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 40/90 (44.44%), Postives = 62/90 (68.89%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIE 495
            F S     +L+V+DF A+WCGPCK + P+  + ++TYSD  F+K+DVD+LS++A E  V AMP+F L K G+++E ++GA   +L   I+
Sbjct:   11 FKSIVCQDKLVVVDFFATWCGPCKAIAPKFEQFSNTYSDATFIKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASIK 100          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 42/85 (49.41%), Postives = 60/85 (70.59%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            +L+V+DF A WCGPCKI+ P+L ++A  YSD V  +K++VDE  D+  E+ V +MPTFV +KGG  +E  +G   D+L K +EKH
Sbjct:   21 KLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKH 105          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.546e-18
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  157 DSPHSESAT-NVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 492
            D PH E A  NV    +  RW           ++++ +F+A WCGPCK + P   +++  Y  + F+ IDVDELSD +  ++++A PTF  ++ G++V++++GA K EL KKI
Sbjct:   15 DEPHIELAGGNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_PLAF7 (Thioredoxin OS=Plasmodium falciparum (isolate 3D7) GN=PF14_0545 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.323e-17
Identity = 39/97 (40.21%), Postives = 64/97 (65.98%), Query Frame = 1
Query:  217 QLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            Q  FDS  + ++L+++DF A WCGPCK + P   + + TY+ + F+K+DVDE+S+V ++  + +MPTF + K G  V+ ++GA    L + IEK+ A
Sbjct:    8 QAEFDSIISQNELVIVDFFAEWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSEVTEKENITSMPTFKVYKNGSSVDTLLGANDSALKQLIEKYAA 104          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.947e-17
Identity = 41/119 (34.45%), Postives = 69/119 (57.98%), Query Frame = 1
Query:  142 GSDGQDSPHSE--SATNVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 492
            G    DS H+   S  NV    +   W           +++V +F+A+WCGPCKI+ P   +++  +S + F+ +DVDELSD +  + ++A PTF  +K G+++ +++GA K EL KK+
Sbjct:    8 GKGDDDSVHNVEFSGGNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO2_DROYA (Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 38/82 (46.34%), Postives = 58/82 (70.73%), Query Frame = 1
Query:  238 KTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            K S +L+V+DF A+WCGPCK++ P+L ++++ Y+D V  +K+DVDE  D+A E+ + +MPTFV +K G +VE   GA    L
Sbjct:   17 KASGKLVVLDFFATWCGPCKMISPKLAELSTQYADTVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAQRL 98          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 38/85 (44.71%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  247 SQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            S+L+V+DF+A+WCGPCK+++P    M   Y DV F++IDVD+  DVA    V+ MPTF   K  ++V    GA K++L + I+K+
Sbjct:   20 SKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 39/75 (52.00%), Postives = 53/75 (70.67%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +V+D  A+WCGPCK + P + K A TY+D  F +IDVDELS+VA E  ++AMPTF+L K G++V  V+GA    L
Sbjct:   27 VVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGAL 101          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 34/88 (38.64%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRAQQ 513
            +++++DF A+WCGPCK + P  +++A+T+  + F K+DVDE  D+  ++ V+ MPTF+  K G  +E + G  +DEL +K+ +H + Q
Sbjct:   28 KIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVSAQ 115          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.255e-16
Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  190 MSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            + FH  A   L     K S +L+V+DF A+WCGPCK++ P+L ++++ ++D V  +K+DVDE  D+A E+ + +MPTFV +K G +VE   GA    L
Sbjct:   11 LHFHLQA--DLDGQLTKASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRL 106          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRX1_SCHPO1.563e-1844.44Thioredoxin-1 OS=Schizosaccharomyces pombe GN=trx1... [more]
THIOT_DROME2.665e-1849.41Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]
TRXH_POPJC4.546e-1837.17Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_PLAF71.323e-1740.21Thioredoxin OS=Plasmodium falciparum (isolate 3D7)... [more]
TRXH9_ARATH2.947e-1734.45Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
THIO2_DROYA8.574e-1746.34Thioredoxin-2 OS=Drosophila yakuba GN=Trx-2 PE=3 S... [more]
THIO_OPHHA1.910e-1644.71Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_EMENI1.910e-1652.00Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
THIO1_CAEEL2.495e-1638.64Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO2_DROME4.255e-1641.84Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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