CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MACMU (Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            V    S A +Q   D      +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:    2 VKQIESKAAFQEALDDA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.259e-16
Identity = 38/88 (43.18%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKHR 504
            +S L+++DF A WCGPCK++ P L  +A+    V  +K+D+D     A+++ V ++PT +L K GKEVER +G + KD L+K I KH+
Sbjct:   15 ASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKHQ 102          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 35/77 (45.45%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V+   GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHICK (Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIE 495
            +L+V+DF+A+WCGPCK+++P    +   + DV F++IDVD+  DVA    V+ MPTF   K GK+V+   GA K++L + I+
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLCDKFGDVVFIEIDVDDAQDVATHCDVKCMPTFQFYKNGKKVQEFSGANKEKLEETIK 102          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA 465
            +V+DF A+WCGPCK + P L K++ T++ +QF K+DVDELS+VA    V AMPTF   KGG+  E V GA
Sbjct:   23 VVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGA 92          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_ECHGR (Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIE 495
            +L+V DF A+WCGPCK + P+L  MA     V FVK+DVDE  DVA++++V AMPT ++ K G E+  V+GA +  + + I+
Sbjct:   23 KLLVCDFFATWCGPCKSLAPKLDAMAKENEKVIFVKLDVDECQDVAEKYRVTAMPTLIVFKNGCEIGHVVGANEAGIRELIQ 104          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_HUMAN (Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 39/98 (39.80%), Postives = 62/98 (63.27%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            V    S   +Q   D+     +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:    2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKHR 504
            +S L+++DF A WCGPCK++ P L  +A+    V  +K+D+D     A++F V ++PT +L K GKEVER +G + KD L+K I KH+
Sbjct:   15 ASGLVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKHQ 102          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_MACMU7.259e-1640.82Thioredoxin OS=Macaca mulatta GN=TXN PE=3 SV=2[more]
THIO_CHLTR7.259e-1643.18Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIO_HORSE9.480e-1645.45Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_CHICK9.480e-1643.90Thioredoxin OS=Gallus gallus GN=TXN PE=3 SV=2[more]
THIO_SHEEP1.617e-1545.45Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PENCH1.617e-1554.29Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
THIO_ECHGR1.617e-1546.34Thioredoxin OS=Echinococcus granulosus GN=TRX PE=3... [more]
THIO_PIG2.112e-1545.45Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_HUMAN2.112e-1539.80Thioredoxin OS=Homo sapiens GN=TXN PE=1 SV=3[more]
THIO_CHLMU2.112e-1544.32Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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