CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CALJA (Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_BOVIN (Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 35/77 (45.45%), Postives = 56/77 (72.73%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF   K G++V    GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 35/84 (41.67%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            +L+V+DF+A+WCGPCK+++P    +   YS+V F+++DVD+  DVA + +V+ MPTF   K G++V    GA K++L   I ++
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEY 104          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_COPCM (Thioredoxin OS=Coprinus comatus PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.705e-15
Identity = 33/96 (34.38%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY--SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            F+    S +++++DF A+WCGPC+++ P   K +  Y  +++ F K+DVD  SD+++E +++AMPTF + K G++++ ++GA    L   ++K  A
Sbjct:   11 FNKLTNSGKIIIIDFWATWCGPCRVISPIFEKFSEKYGANNIVFAKVDVDTASDISEEAKIRAMPTFQVYKDGQKIDELVGANPTALESLVQKSLA 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_RABIT (Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 6.145e-15
Identity = 37/98 (37.76%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            V    S + +Q   DS     +L+V+DF+A+WCGPCK+++P    ++  +++V F+++DVD+  D+A E +V+ MPTF   K G++V    GA K++L
Sbjct:    2 VKQIESKSAFQEVLDSA--GDKLVVVDFSATWCGPCKMIKPFFHALSEKFNNVVFIEVDVDDCKDIAAECEVKCMPTFQFFKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_RAT (Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.025e-15
Identity = 34/77 (44.16%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDEL 480
            +L+V+DF+A+WCGPCK+++P    +   YS+V F+++DVD+  DVA + +V+ MPTF   K G++V    GA K++L
Sbjct:   21 KLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKL 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 1.048e-14
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  184 NVMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +V+   S A W       K   + +V+DF A+WCGPCK++ P    +++ Y+  V F+K+DVD ++ VA+   + AMPTF + K G + + ++GA +D+L   + KH A
Sbjct:    4 SVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHAA 112          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.369e-14
Identity = 29/86 (33.72%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            +++L+++DF A+WCGPC+++ P   + ++ Y +  F+K++ D   D+ Q + + AMPTF+ +K  ++V+ V GA +  + +KI +H
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXL4_ARATH (Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g11530 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 34/103 (33.01%), Postives = 59/103 (57.28%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIE 495
            V+   S+  W  +    K  +  +V  F A WC P   M     ++A  Y D  F+ +DVDE+ +VA + +V+AMPTF+ +K G  +++++GA  DE+ K+++
Sbjct:    4 VVKIDSAESWNFYVSQAKNQNCPIVAHFTALWCIPSVFMNSFFEELAFNYKDALFLIVDVDEVKEVASQLEVKAMPTFLFLKDGNAMDKLVGANPDEIKKRVD 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_GEOCY (Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.335e-14
Identity = 39/86 (45.35%), Postives = 59/86 (68.60%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEV-ERVIGARKDELLKKIEKHR 504
            +L+V+DF ASWCGPC+ + P+  +MA  + DV F K+DVDE  + A+  ++QAMPTF   K GK + + V GA +  L +KI+K++
Sbjct:   21 KLVVIDFTASWCGPCQRIAPKYVEMAKEFPDVIFYKVDVDENDETAEAEKIQAMPTFKFYKSGKALSDYVQGANEAGLREKIKKNK 106          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_CALJA2.112e-1545.45Thioredoxin OS=Callithrix jacchus GN=TXN PE=3 SV=3[more]
THIO_BOVIN2.758e-1545.45Thioredoxin OS=Bos taurus GN=TXN PE=3 SV=3[more]
THIO_MOUSE4.705e-1541.67Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]
THIO_COPCM4.705e-1534.38Thioredoxin OS=Coprinus comatus PE=1 SV=1[more]
THIO_RABIT6.145e-1537.76Thioredoxin OS=Oryctolagus cuniculus GN=TXN PE=1 S... [more]
THIO_RAT8.025e-1544.16Thioredoxin OS=Rattus norvegicus GN=Txn PE=1 SV=2[more]
TRXH_CHLRE1.048e-1435.78Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
NGLY1_CAEEL1.369e-1433.72Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXL4_ARATH2.335e-1433.01Thioredoxin-like 4 OS=Arabidopsis thaliana GN=At1g... [more]
THIO_GEOCY2.335e-1445.35Thioredoxin OS=Geodia cydonium GN=THIO PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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