CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCGE (Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.050e-14
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIG 462
            +++DF A+WCGPCK+  PE +K A  +SD QFVK++VD+ +D+A  + + ++PT V+ + G E +R IG
Sbjct:   21 VIVDFWAAWCGPCKLTSPEFQKAADEFSDAQFVKVNVDDHTDIAAAYNITSLPTIVVFENGVEKKRAIG 89          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_PONAB (Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 39/99 (39.39%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  187 VMSFHSSARWQLHFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTF-VLVKGGKEVERVIGARKDEL 480
            V    S   +Q   D+     +L+V+DF+A+WCGPCK+++P    ++  YS+V F+++DVD+  DVA E +V+ MPTF    K G++V    GA K++L
Sbjct:    2 VKQIESKTAFQEALDAA--GDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKCMPTFQFFFKKGQKVGEFSGANKEKL 98          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIOM_RAT (Thioredoxin, mitochondrial OS=Rattus norvegicus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.983e-14
Identity = 45/126 (35.71%), Postives = 70/126 (55.56%), Query Frame = 1
Query:  130 FGAGGSDGQDSP-HSESATNVMSFHSSARWQLHF-DSCKTSSQLMVMDFAASWCGPCKIMEPELRKM-ASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            + AGG  G  SP  +   T V S   + +    F D    S   +V+DF A WCGPCKI+ P L KM A  +  V   K+D+D+ +D+A E++V A+PT + +K G  V++ +G + ++ L+   K
Sbjct:   37 YNAGGLTGTPSPARTFHTTRVCSTTFNVQDGPDFQDRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLK 162          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLCV (Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.794e-14
Identity = 34/84 (40.48%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  253 LMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            L+++DF A WCGPCK++ P L  + +  S V   K+++D+    A+++ V ++PT +L K GKEV+RV+G + KD L++ I +H
Sbjct:   18 LVLIDFFAEWCGPCKMLTPVLESLEAEVSSVLIGKVNIDDHPAPAEQYGVSSIPTLILFKDGKEVDRVVGLKDKDSLIRLINQH 101          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 28/86 (32.56%), Postives = 55/86 (63.95%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKH 501
            S++L+++DF A+WCGPC+++ P   +++  + +  F+K++ D   D+   + + AMPTF+  K  ++V+ V GA +  ++  I KH
Sbjct:   21 SNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCPN (Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.159e-13
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIG 462
            S+  +++DF A WCGPCKI  PE  K AS  S V F K++VDE +D+A  +++ ++PT VL + G+E  R IG
Sbjct:   17 SNNKVIIDFWAEWCGPCKITGPEFAKAASEVSTVAFAKVNVDEQTDIAAAYKITSLPTIVLFEKGQEKHRAIG 89          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  241 TSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHR 504
            ++ ++ V+DF A WCGPCK ++P L K++       F+ ++ D+ SD+AQ+  V A+PT VL + G+E++R++GA    L   + K++
Sbjct:   33 SADKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKYQ 120          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLPN (Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.513e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 1
Query:  223 HFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKK-IEKH 501
            +FDS   +S L+++DF A WCGPC+++ P L  +A+    V   KI++DE S  A+ ++V ++PT +L K G EV RV+G +  E L   I KH
Sbjct:    9 NFDSF-IASGLVLVDFFAEWCGPCRMLTPILENLAAELPHVTIGKINIDENSKPAETYEVSSIPTLILFKDGNEVARVVGLKDKEFLTNLINKH 101          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXF_MESCR (Thioredoxin F-type, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 35/85 (41.18%), Postives = 57/85 (67.06%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVD-ELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +V+D    WCGPCK+M P+ +++A    DV F+K+D + E   +A+E  ++ +PTF ++KGGK V+ V GA+ D+L+  IE  R+
Sbjct:  106 VVLDMYTQWCGPCKVMAPKYQELAEKLLDVVFLKLDCNQENKPLAKELGIRVVPTFKILKGGKIVDEVTGAKFDKLVAAIEAARS 190          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAW (Thioredoxin OS=Staphylococcus aureus (strain MW2) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_MYCGE3.050e-1444.93Thioredoxin OS=Mycoplasma genitalium GN=trxA PE=3 ... [more]
THIO_PONAB3.983e-1439.39Thioredoxin OS=Pongo abelii GN=TXN PE=3 SV=3[more]
THIOM_RAT3.983e-1435.71Thioredoxin, mitochondrial OS=Rattus norvegicus GN... [more]
THIO_CHLCV6.794e-1440.48Thioredoxin OS=Chlamydophila caviae GN=trxA PE=3 S... [more]
NGLY1_CAEBR8.873e-1432.56Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
THIO_MYCPN1.159e-1346.58Thioredoxin OS=Mycoplasma pneumoniae GN=trxA PE=3 ... [more]
TRX2_SCHPO1.513e-1336.36Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
THIO_CHLPN1.513e-1341.49Thioredoxin OS=Chlamydia pneumoniae GN=trxA PE=3 S... [more]
TRXF_MESCR2.582e-1341.18Thioredoxin F-type, chloroplastic OS=Mesembryanthe... [more]
THIO_STAAW2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain MW2) ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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