CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAU (Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAS (Thioredoxin OS=Staphylococcus aureus (strain MSSA476) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 36/94 (38.30%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A+ Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KVESGVQLVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIOM_MOUSE (Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  229 DSCKTSSQLMVMDFAASWCGPCKIMEPELRKM-ASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            D    S   +V+DF A WCGPCKI+ P L KM A  +  V   K+D+D+ +D+A E++V A+PT + +K G  V++ +G + ++ L+   K
Sbjct:   72 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAIKNGDVVDKFVGIKDEDQLEAFLK 162          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_STAAU2.582e-1338.30Thioredoxin OS=Staphylococcus aureus GN=trxA PE=1 ... [more]
THIO_STAAS2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain MSSA4... [more]
THIO_STAAR2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB2.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA82.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA32.582e-1338.30Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIOM_MOUSE3.372e-1338.46Thioredoxin, mitochondrial OS=Mus musculus GN=Txn2... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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