CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEP--ELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHR 504
            +L+V+DF A+WCGPC+ + P  E    +  Y +V F+K+DVD+ +DV+    ++ MPTF   K G++++   GA +  L +KI  H+
Sbjct:   21 KLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDHK 107          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAES (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 12228) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 36/94 (38.30%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A  Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KIESGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAEQ (Thioredoxin OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 36/94 (38.30%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            FDS K  S + ++DF A+WCGPCK++ P L ++A  Y      +K+DVDE    A +++V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   11 FDS-KIESGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 32/88 (36.36%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFV-KIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            S + +++DF ASWCGPC ++ P + ++A  Y     + K++VDE  ++A ++ ++++PT +++KGGK V++++GA  K+ + KKI++H
Sbjct:   19 SDKAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIOM_HUMAN (Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.751e-13
Identity = 35/91 (38.46%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  229 DSCKTSSQLMVMDFAASWCGPCKIMEPELRKM-ASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            D    S   +V+DF A WCGPCKI+ P L KM A  +  V   K+D+D+ +D+A E++V A+PT + +K G  V++ +G + ++ L+   K
Sbjct:   72 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLK 162          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 36/91 (39.56%), Postives = 64/91 (70.33%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTY-SDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKI 492
            F    +S++ +++DF A+WCGPCK++ P L ++AS   + +   K+DVD   ++A+EFQV ++PT +L +GG+ V+R++GA+ K  LL+ +
Sbjct:  360 FADVLSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAKGKAALLRDL 450          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 35/87 (40.23%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  247 SQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            S + ++DF A+WCGPCK++ P L ++A  Y      +K+DVDE    A +F+V ++PT ++ K G+ V++V+G + K+ L + IEKH
Sbjct:   17 SGVNLVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 7.511e-13
Identity = 31/90 (34.44%), Postives = 59/90 (65.56%), Query Frame = 1
Query:  229 DSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            D   ++++ +V+DF A+WCGPCKI+ P   ++A    D  FVK+DVD+ ++++ E++++++PT +  + GK  ++ IG      LK++ K
Sbjct:   11 DQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELKELLK 100          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXM_CHLRE (Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 35/88 (39.77%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            SS  +++DF A WCGPC+I+ P + ++A  Y D ++ VK++ DE  +VA E+ ++++PT ++ KGGK+ E +IGA  K  +++ +EK+
Sbjct:   51 SSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKY 138          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  229 DSCKTSSQLMVMDFAASWCGPCKIMEPELRKM-ASTYSDVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            D    S   +V+DF A WCGPCKI+ P L K+ A  +  V   K+D+D+ +D+A E++V A+PT + +K G  V++ +G + ++ L+   K
Sbjct:   72 DRVVNSETPVVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLK 162          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_ICTPU4.404e-1337.93Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
THIO_STAES5.751e-1338.30Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_STAEQ5.751e-1338.30Thioredoxin OS=Staphylococcus epidermidis (strain ... [more]
THIO_CHLLT5.751e-1336.36Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]
THIOM_HUMAN5.751e-1338.46Thioredoxin, mitochondrial OS=Homo sapiens GN=TXN2... [more]
TRXB_MYCLE7.511e-1339.56Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_STAS17.511e-1340.23Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_MYCGA7.511e-1334.44Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
TRXM_CHLRE1.281e-1239.77Thioredoxin M-type, chloroplastic OS=Chlamydomonas... [more]
THIOM_BOVIN1.281e-1237.36Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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