CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 32/87 (36.78%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVD-ELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +L+V+D    WCGPCK++ P+ + ++  Y DV F+K+D + +   +A+E  ++ +PTF ++K  K V+ V GA+ D+L+  IE  R+
Sbjct:   88 KLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIETARS 174          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.185e-12
Identity = 33/87 (37.93%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  247 SQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKIEKH 501
            S + ++DF A+WCGPCK++ P L ++A  Y      +K+DVDE    A +F+V ++PT ++ K G+ V++V+G + K+ L + ++KH
Sbjct:   17 SGVKLVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 35/92 (38.04%), Postives = 54/92 (58.70%), Query Frame = 1
Query:  223 HFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFV--KIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 492
            H+ S    S  + +D  A WCGPCK + P   ++AS Y+  +FV  K++VDE   +A    V+AMPTFV  + GK+++ + GA    L +K+
Sbjct:   11 HWISTIPKSGYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALKEKV 102          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 34/86 (39.53%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  241 TSSQLMVMDFAASWCGPCKIMEPELRKMASTYS-DVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKI 492
            +S++ +++DF A+WCGPCK++ P L ++A+  + D+   K+DVD   + A+ FQV ++PT +L K G+ V+R++GA+ K  LL+++
Sbjct:   23 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLREL 108          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 34/86 (39.53%), Postives = 62/86 (72.09%), Query Frame = 1
Query:  241 TSSQLMVMDFAASWCGPCKIMEPELRKMASTYS-DVQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKI 492
            +S++ +++DF A+WCGPCK++ P L ++A+  + D+   K+DVD   + A+ FQV ++PT +L K G+ V+R++GA+ K  LL+++
Sbjct:   23 SSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAKGKAALLREL 108          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 31/87 (35.63%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVD-ELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +++V+D    WCGPCK++ P+ + ++  Y DV F+K+D + E   +A+E  ++ +PTF ++K  + V+ V GA+ D+L+  IE  R+
Sbjct:   91 KIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIETARS 177          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 30/87 (34.48%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVD-ELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +++V+D    WCGPCK++ P+ ++++  Y D+ F+K+D + +   +A+E  ++ +PTF ++K  K V+ V GA+ ++LL  IE  R+
Sbjct:   98 KIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIEAARS 184          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO2_CHLTE (Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 30/88 (34.09%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFV-KIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            S ++ ++DF A+WCGPC ++ P + ++A  Y     + K++VDE  + A ++ ++++PT +++KGGK V++++GA  K+ + KK+++H
Sbjct:   20 SDKVALVDFWAAWCGPCMMLGPVIEELAGDYEGKAIIAKLNVDENPNTAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKLDEH 107          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            S +L+++DF A WCGPC+++ P + ++A  Y + V+ VKI+ DE   ++ E+ ++++PT +L K GK V+ VIGA  K  L   ++K+
Sbjct:   19 SEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 34/85 (40.00%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSDVQFVKIDVD-ELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEKHRA 507
            +V+D    WCGPCK M P+  K+A  Y DV F+K+D + E   +A+E  ++ +PTF ++K    V  V GA+ D+LL+ I+  R+
Sbjct:  105 VVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQAARS 189          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
TRXF1_ARATH2.185e-1236.78Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]
THIO_STAHJ2.185e-1237.93Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
TXL1_SCHPO3.728e-1238.04Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
THIO_MYCTU3.728e-1239.53Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO3.728e-1239.53Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]
TRXF_BRANA4.869e-1235.63Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
TRXF2_ARATH4.869e-1234.48Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
THIO2_CHLTE4.869e-1234.09Thioredoxin-2 OS=Chlorobium tepidum GN=trx2 PE=3 S... [more]
THIO_CYACA6.359e-1238.64Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
TRXF_SPIOL8.305e-1240.00Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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