CB610526

Overview
NameCB610526
Unique NameCB610526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length736
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_NEUCR (Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:  226 FDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD---VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEV 447
            F +   ++Q +V DF A WCGPCK + P   + A T+S    + F KI+VD +  VAQ ++V AMPTF+  K GK+V
Sbjct:   14 FANLLNTTQYVVADFYADWCGPCKAIAPMYAQFAKTFSIPNFLAFAKINVDSVQQVAQHYRVSAMPTFLFFKNGKQV 90          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 35/92 (38.04%), Postives = 59/92 (64.13%), Query Frame = 1
Query:  232 SCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKK-IEKH 501
            S +TS  +++ DF A WCGPCK++ P L ++     D ++ VKIDVDE  + A ++ V ++PT +++K G+ VE  +G +  E L++ + KH
Sbjct:   12 SAETSEGVVLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_SYNE7 (Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.305e-12
Identity = 34/88 (38.64%), Postives = 59/88 (67.05%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            SS  +++DF A WCGPC+++ P + ++A  YSD V+ VK++ DE   VA ++ ++++PT ++ K G+ V+ V+GA  K  L   ++KH
Sbjct:   19 SSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNTDENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_ALIAC (Thioredoxin OS=Alicyclobacillus acidocaldarius GN=trxA PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.417e-11
Identity = 31/89 (34.83%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  223 HFDSCKTSSQLMVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLK 486
            +F       + +++DF A+WCGPC++M P L + A  ++D V   K++VDE  +   +F + ++PT +L KGG+ V+++IG +  E L+
Sbjct:    9 NFQQAIQGDKPVLVDFWAAWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPETTSQFGIMSIPTLILFKGGRPVKQLIGYQPKEQLE 97          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 35/87 (40.23%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  244 SSQLMVMDFAASWCGPCKIMEPELRKMASTYSD---VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGAR-KDELLKKI 492
            SS+ +++DF A+WCGPCK++ P L ++A+   D   V  + +DVD     A++FQV ++PT +L K G  V+R++GA+ K  LL+++
Sbjct:   22 SSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAKGKAALLREL 108          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFV-KIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            +L+V+DF A+WCGPCK ME  ++ +A  YS    V KIDVD+  ++ + ++V++MPTFV ++  + +    GA + +L   + K
Sbjct:   20 KLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKLTNMMAK 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = 1
Query:  250 QLMVMDFAASWCGPCKIMEPELRKMASTYSDVQFV-KIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKIEK 498
            +L+V+DF A+WCGPCK ME  ++ +A  YS    V KIDVD+  ++ + ++V++MPTFV ++  + +    GA + +L   + K
Sbjct:   20 KLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKLTNMMAK 103          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_ANASP (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 31/84 (36.90%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            +++DF A WCGPC+++ P + ++A  Y   ++ VK++ DE   VA ++ ++++PT ++ KGG++V+ V+GA  K  L + +EKH
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO1_ANASO (Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 31/84 (36.90%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGA-RKDELLKKIEKH 501
            +++DF A WCGPC+++ P + ++A  Y   ++ VK++ DE   VA ++ ++++PT ++ KGG++V+ V+GA  K  L + +EKH
Sbjct:   23 VLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNTDENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKH 106          
BLAST of CB610526 vs. ExPASy Swiss-Prot
Match: THIO_CHLAA (Thioredoxin OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=trxA PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 30/80 (37.50%), Postives = 52/80 (65.00%), Query Frame = 1
Query:  256 MVMDFAASWCGPCKIMEPELRKMASTYSD-VQFVKIDVDELSDVAQEFQVQAMPTFVLVKGGKEVERVIGARKDELLKKI 492
            +V+DF A WCGPC+++ P L K+A  Y+  +   K++ D+    A +  +Q +PT V+ K G+EV R++GAR + + ++I
Sbjct:   23 VVVDFWAPWCGPCRVIAPILDKLAGEYAGRLTIAKVNTDDNVQYASQLGIQGIPTLVIFKDGREVGRLVGARPEAMYREI 102          
The following BLAST results are available for this feature:
BLAST of CB610526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
THIO_NEUCR8.305e-1244.16Thioredoxin OS=Neurospora crassa GN=trx PE=3 SV=1[more]
THIO_BACSU8.305e-1238.04Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]
THIO1_SYNE78.305e-1238.64Thioredoxin-1 OS=Synechococcus elongatus (strain P... [more]
THIO_ALIAC1.417e-1134.83Thioredoxin OS=Alicyclobacillus acidocaldarius GN=... [more]
THIO_MYCSM1.850e-1140.23Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO1_DROYA1.850e-1138.10Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]
THIO1_DROME1.850e-1138.10Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
THIO1_ANASP1.850e-1136.90Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO1_ANASO1.850e-1136.90Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN... [more]
THIO_CHLAA2.416e-1137.50Thioredoxin OS=Chloroflexus aurantiacus (strain AT... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_H08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_H08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610526 ID=CB610526; Name=CB610526; organism=Citrus sinensis; type=EST; length=736bp
GGGGACTCCACTTCTTCGTCTTCTTCTTCTTCTTCTTCTTCATAATCCCC
CTTCTATAAACGAATCCATTACTATTGCGTCGTCTCGGCTTGTTCTTGTT
TAAAGATGGGGGGTATTCTTTCAAACATTTTTGGGGCCGGAGGATCCGAC
GGCCAAGATTCACCGCACTCAGAATCTGCTACCAACGTCATGTCGTTTCA
CTCGTCCGCCAGATGGCAGCTCCATTTCGATTCCTGCAAAACTTCTTCCC
AATTGATGGTGATGGATTTTGCGGCGTCGTGGTGTGGGCCCTGCAAGATC
ATGGAACCGGAACTGCGTAAGATGGCTTCGACCTACTCCGATGTCCAGTT
CGTCAAGATTGATGTTGATGAGTTGTCTGATGTGGCGCAAGAGTTTCAGG
TGCAGGCAATGCCTACGTTTGTGTTGGTGAAGGGAGGGAAGGAAGTTGAG
AGGGTGATTGGTGCTCGAAAGGATGAGCTTTTGAAGAAAATTGAGAAACA
CAGAGCTCAGCAGTGACAGACCAGCCGCCATAAGCCGACTGATTGCTCGC
TCATGGTCTCTCTCTTATATATGTTTCGCTTTTTTGTATTTTCAATTGGG
AAAATTGACTTTGATCAATTCTCATGATGATGATGCGCTCTCCATCTTTA
TGTAATAATAAATTCTCTTTCAACGAATCTATCACATTATGTATTTCCTA
TTTTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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