CB610538

Overview
NameCB610538
Unique NameCB610538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.761e-29
Identity = 65/129 (50.39%), Postives = 79/129 (61.24%), Query Frame = 3
Query:   78 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            R    G   EATHPD++RA LAEF+ST +FVFA EGS ++ +KL      H G NTP                      N+SGGHVNPAVTFGA VGG ++ +R I YWIAQLLG+ +ACLLL+  TNG
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTTNG 135          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIPA_PHAVU (Probable aquaporin TIP-type alpha OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.053e-28
Identity = 63/126 (50.00%), Postives = 80/126 (63.49%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTN 446
            M  R  + G   EATHPD++RA+LAEF ST IFVFAGEGSG+A  K+  + A +                       ++SGGHVNPAV+FGA +GG IS++R + YWIAQLLGS VA L+L+ VTN
Sbjct:    1 MATRRYSFGRTDEATHPDSMRASLAEFASTFIFVFAGEGSGLALVKIYQDSAFSAGELLALALAHAFALFAAVSASMHVSGGHVNPAVSFGALIGGRISVIRAVYYWIAQLLGSIVAALVLRLVTN 126          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            IA G   ++    +L+A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.802e-28
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            IA G   ++    +L+A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     NISGGH+NPAVT G  VGGNI++L G  YWIAQLLGSTVACLLLK+VTNG
Sbjct:    4 IAFGSIGDSFSVGSLKAYVAEFIATLLFVFAGVGSAIAYNKLTADAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITILTGFFYWIAQLLGSTVACLLLKYVTNG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP31_MAIZE (Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.883e-28
Identity = 62/128 (48.44%), Postives = 79/128 (61.72%), Query Frame = 3
Query:   66 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            + P R   VG   +ATHPD +RAA++EFI+T IFVFA EGS ++  K+ H+  +T                       NISGGHVNPAVTFGA VGG +SL+R +LYW+AQLLG+  A LLL+  T G
Sbjct:    5 VRPGRRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHD-MSTAGGLVAVALAHALALAVAVAVAVNISGGHVNPAVTFGALVGGRVSLVRAVLYWVAQLLGAVAATLLLRLATGG 131          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.515e-27
Identity = 63/122 (51.64%), Postives = 80/122 (65.57%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            IA G   ++    +++A +AEFI+TL+FVFAG GS +A+NKLT + A  P+                     N+SGGH+NPAVT G  VGGNI++L G+ YWIAQ LGSTVACLLLKFVTNG
Sbjct:    4 IAFGSIGDSFSVASIKAYVAEFIATLLFVFAGVGSAIAYNKLTSDAALDPAGLVAVAVAHAFALFVGVSMAANVSGGHLNPAVTLGLAVGGNITILTGLFYWIAQCLGSTVACLLLKFVTNG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP31_ORYSJ (Probable aquaporin TIP3-1 OS=Oryza sativa subsp. japonica GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.758e-27
Identity = 60/126 (47.62%), Postives = 78/126 (61.90%), Query Frame = 3
Query:   72 PIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            P R   VG   +ATHPD +RAA++EF++T IFVFA EGS ++  KL +   +TP                      NISGGHVNPA+TFGA +GG +SL+R + YW+AQLLG+ VA LLL+  T G
Sbjct:    8 PGRRFTVGRSEDATHPDTIRAAISEFLATAIFVFAAEGSILSLGKL-YQDMSTPGGLVAVSLAHALALAVAVAVAVNISGGHVNPAITFGALLGGRLSLIRALFYWLAQLLGAVVATLLLRLTTGG 132          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP23_MAIZE (Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2)

HSP 1 Score: 119.013 bits (297), Expect = 9.821e-27
Identity = 60/122 (49.18%), Postives = 83/122 (68.03%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +A G  R++    +L+A +AEFI+TL+FVFAG GS +A+++LT  GA  P+                     NISGGH+NPAVTFG  VGG+I++L GILYW+AQLLG++VAC LL++VT+G
Sbjct:    4 LAFGSFRDSLSAASLKAYVAEFIATLLFVFAGVGSAIAYSQLTKGGALDPAGLVAIAIAHAFALFVGVSMAANISGGHLNPAVTFGLAVGGHITILTGILYWVAQLLGASVACFLLQYVTHG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP32_MAIZE (Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.675e-26
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 3
Query:   78 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGA--NTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            R   VG   +ATHPD +RAA++EFI+T IFVFA EGS ++  K+ H+ +  +T                       N+SGGHVNPAVTFGA VGG +SL+R +LYW AQLLG+  A LLL+  T G
Sbjct:   11 RRFTVGRSEDATHPDTIRAAISEFIATAIFVFAAEGSVLSLGKMYHDHSTISTAGGLVAVALAHALGLAVAVAVAVNVSGGHVNPAVTFGALVGGRVSLVRAVLYWAAQLLGAVAATLLLRLATGG 136          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.675e-26
Identity = 63/122 (51.64%), Postives = 77/122 (63.11%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            I VG   ++    +L+A L+EFI+TL+FVFAG GS +AF KLT +GA  P+                     NISGGH+NPAVT G  +GGNI+L+ G  YWIAQ LGS VACLLL FVTNG
Sbjct:    4 IEVGSVGDSFSVSSLKAYLSEFIATLLFVFAGVGSAVAFAKLTSDGALDPAGLVAIAIAHAFALFVGVSIAANISGGHLNPAVTLGLAIGGNITLITGFFYWIAQCLGSIVACLLLVFVTNG 125          
The following BLAST results are available for this feature:
BLAST of CB610538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TIP31_ARATH2.761e-2950.39Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]
TIPA_PHAVU3.053e-2850.00Probable aquaporin TIP-type alpha OS=Phaseolus vul... [more]
TIP2_TOBAC6.802e-2853.28Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP1_TOBAC6.802e-2853.28Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP31_MAIZE8.883e-2848.44Aquaporin TIP3-1 OS=Zea mays GN=TIP3-1 PE=2 SV=1[more]
TIP_ANTMA1.515e-2751.64Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP31_ORYSJ5.758e-2747.62Probable aquaporin TIP3-1 OS=Oryza sativa subsp. j... [more]
TIP23_MAIZE9.821e-2749.18Aquaporin TIP2-3 OS=Zea mays GN=TIP2-3 PE=2 SV=2[more]
TIP32_MAIZE1.675e-2647.62Aquaporin TIP3-2 OS=Zea mays GN=TIP3-2 PE=2 SV=1[more]
TIP23_ARATH1.675e-2651.64Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_F08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610538 ID=CB610538; Name=CB610538; organism=Citrus sinensis; type=EST; length=466bp
GGGGACACTTACGTGAACTAGTAGTAATCACACCCCAAAGGTTCAATCTG
ATTCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
ATACCACATCTGCTTT
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