CB610538

Overview
NameCB610538
Unique NameCB610538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-26
Identity = 59/122 (48.36%), Postives = 82/122 (67.21%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +A G   ++    +++A +AEFI+TL+FVFAG GS +A+ +LT+ GA  P+                     NISGGH+NPAVTFG  VGG+I++L G+ YWIAQLLG+++ACLLLKFVT+G
Sbjct:    4 LAFGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLGASIACLLLKFVTHG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-26
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +A G   ++    +++A +AEFI+TL+FVFAG GS +A+ +LT+ GA  P+                     NISGGH+NPAVTFG  VGG+I++L G+ YW+AQLLG+TVACLLL FVT+G
Sbjct:    4 LAFGSVGDSFSATSIKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHALALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGVFYWVAQLLGATVACLLLGFVTHG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 8.314e-26
Identity = 58/122 (47.54%), Postives = 81/122 (66.39%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +A G   ++    +++A +AEFI+TL+FVFAG GS +AF +LT+ GA  P+                     N SGGH+NPAVTFG  VGG+I++L G+ YW+AQLLG++VACLLL+FVT+G
Sbjct:    4 LAFGSVGDSFSVTSIKAYVAEFIATLLFVFAGVGSAIAFGQLTNGGALDPAGLVAIAVAHALALFVGVSVAANTSGGHLNPAVTFGLAVGGHITVLTGLFYWVAQLLGASVACLLLRFVTHG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP22_ARATH (Probable aquaporin TIP2-2 OS=Arabidopsis thaliana GN=TIP2-2 PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 1.852e-25
Identity = 61/124 (49.19%), Postives = 77/124 (62.10%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHT 455
            I +G   ++    +L+A L+EFI+TL+FVFAG GS +AF KLT + A  P+                     NISGGH+NPAVT G  VGGNI+++ G  YWIAQ LGS VACLLL FVTNG +
Sbjct:    4 IEIGSVGDSFSVASLKAYLSEFIATLLFVFAGVGSALAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAVGGNITVITGFFYWIAQCLGSIVACLLLVFVTNGES 127          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP21_ARATH (Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1 PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 3.159e-25
Identity = 60/109 (55.05%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  123 ALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +LRA LAEFISTL+FVFAG GS +A+ KLT + A                         NISGGHVNPAVTFG  VGG I+++ G+ YWIAQLLGST AC LLK+VT G
Sbjct:   17 SLRAYLAEFISTLLFVFAGVGSAIAYAKLTSDAALDTPGLVAIAVCHGFALFVAVAIGANISGGHVNPAVTFGLAVGGQITVITGVFYWIAQLLGSTAACFLLKYVTGG 125          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP22_ORYSJ (Probable aquaporin TIP2-2 OS=Oryza sativa subsp. japonica GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.124e-22
Identity = 56/121 (46.28%), Postives = 73/121 (60.33%), Query Frame = 3
Query:   81 NIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 443
            NIA G   ++    +L+A +AEFISTL+FVFAG GS +A+ KLT      P+                     NISGGHVNPAVTFG  +GG I++L G+ YWIAQLLG+ V  +L++F T
Sbjct:    4 NIAFGRFDDSFSAASLKAYVAEFISTLVFVFAGVGSAIAYTKLTGGAPLDPAGLVAVAVCHGFGLFVAVAIGANISGGHVNPAVTFGLALGGQITILTGVFYWIAQLLGAIVGAVLVQFCT 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP41_ARATH (Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.768e-21
Identity = 54/128 (42.19%), Postives = 71/128 (55.47%), Query Frame = 3
Query:   75 IRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            ++ I +GH  EA  PD ++A + EFI+T +FVFAG GS MA + L  N                           +ISGGH+NPAVT G  +GG+IS+ R  LYWI QLL S+ AC LL ++T G  T
Sbjct:    1 MKKIELGHHSEAAKPDCIKALIVEFITTFLFVFAGVGSAMATDSLVGNTL----VGLFAVAVAHAFVVAVMISAGHISGGHLNPAVTLGLLLGGHISVFRAFLYWIDQLLASSAACFLLSYLTGGMGT 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.166e-21
Identity = 56/122 (45.90%), Postives = 71/122 (58.20%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            +A+GH REAT P  LRA +AE + T +FVF+G GS MA  KL   G +T                       ++SGGH+NPAVT G   GG+I+L R  LY  AQLLGS++ACLLL  +T G
Sbjct:    4 LALGHHREATDPGCLRAVVAELLLTFLFVFSGVGSAMAAAKLG-GGGDTIMGLTAVAAAHALVVAVMVSAGLHVSGGHINPAVTLGLAAGGHITLFRSALYAAAQLLGSSLACLLLAALTGG 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP44_MAIZE (Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.374e-20
Identity = 55/118 (46.61%), Postives = 66/118 (55.93%), Query Frame = 3
Query:   87 AVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFV 440
            A+GH REA+    +RA LAE I T +FVFAG GS MA  KL   G +T                       ++SGGH+NPAVT G    G I+L R  LY  AQLLGST+ACLLL F+
Sbjct:    5 ALGHHREASDAGCVRAVLAELILTFLFVFAGVGSAMATGKLAGGGGDTVVGLTAVALAHTLVVAVMVSAGLHVSGGHINPAVTLGLAATGRITLFRSALYVAAQLLGSTLACLLLAFL 122          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP42_ORYSJ (Probable aquaporin TIP4-2 OS=Oryza sativa subsp. japonica GN=TIP4-2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 49/131 (37.40%), Postives = 67/131 (51.15%), Query Frame = 3
Query:   66 IMPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            ++P+  + +GH  EA  P  LRA   E + T +FVF G  S +   K    GA   +                     ++SGGH+NPAVT    VGG+I+L R  LY  AQL GS++ACLLL+ +T G  T
Sbjct:    3 LLPMTKLELGHRGEAWEPGCLRAVAGELLFTFLFVFIGVASTITAGKAA-GGAGEAAAVTAAAMAQALVVAVLATAGFHVSGGHLNPAVTLSLAVGGHITLFRSALYVAAQLAGSSLACLLLRCLTGGAAT 132          
The following BLAST results are available for this feature:
BLAST of CB610538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TIP21_ORYSJ2.188e-2648.36Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP21_MAIZE2.188e-2648.36Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP22_MAIZE8.314e-2647.54Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP22_ARATH1.852e-2549.19Probable aquaporin TIP2-2 OS=Arabidopsis thaliana ... [more]
TIP21_ARATH3.159e-2555.05Aquaporin TIP2-1 OS=Arabidopsis thaliana GN=TIP2-1... [more]
TIP22_ORYSJ1.124e-2246.28Probable aquaporin TIP2-2 OS=Oryza sativa subsp. j... [more]
TIP41_ARATH2.768e-2142.19Aquaporin TIP4-1 OS=Arabidopsis thaliana GN=TIP4-1... [more]
TIP43_ORYSJ6.166e-2145.90Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP44_MAIZE1.374e-2046.61Aquaporin TIP4-4 OS=Zea mays GN=TIP4-4 PE=2 SV=1[more]
TIP42_ORYSJ5.402e-1737.40Probable aquaporin TIP4-2 OS=Oryza sativa subsp. j... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_F08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610538 ID=CB610538; Name=CB610538; organism=Citrus sinensis; type=EST; length=466bp
GGGGACACTTACGTGAACTAGTAGTAATCACACCCCAAAGGTTCAATCTG
ATTCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
ATACCACATCTGCTTT
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