CB610538

Overview
NameCB610538
Unique NameCB610538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length466
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP32_ORYSJ (Probable aquaporin TIP3-2 OS=Oryza sativa subsp. japonica GN=TIP3-2 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 5.402e-17
Identity = 49/111 (44.14%), Postives = 59/111 (53.15%), Query Frame = 3
Query:  117 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            P A RAAL+EF++T +FVFA EGS     K+ +    T                       N SGGHVNPAVTFG  VG  IS  R  LYW AQLLG+ +A LLL+  + G
Sbjct:   25 PGATRAALSEFVATAVFVFAAEGSVYGLWKM-YRDTGTLGGLLVVAVAHALALAAAVAVSRNASGGHVNPAVTFGVLVGRRISFARAALYWAAQLLGAVLAVLLLRLASGG 134          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP51_ORYSJ (Probable aquaporin TIP5-1 OS=Oryza sativa subsp. japonica GN=TIP5;1 PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 7.055e-17
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 3
Query:  117 PDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            P ALRA  AEF ST +FVF   GS ++   LT +  +  S                     ++SGGHVNPAVTF   +GG+I++   I YW +Q+LGST ACL+L +++ G
Sbjct:   14 PPALRAYFAEFFSTFLFVFIAVGSTISARMLTPDETSDASSLMATAVAQAFGLFAAVFIAADVSGGHVNPAVTFAYAIGGHITVPSAIFYWASQMLGSTFACLVLHYISAG 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP43_MAIZE (Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.572e-16
Identity = 47/125 (37.60%), Postives = 64/125 (51.20%), Query Frame = 3
Query:   84 IAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            + +GH  EA+ PD  R  L E + T +FVF G G+ M  +  T  G+                         +ISGGHVNPAVT    VGG+++L R  LY  AQ+L S+ AC LL+++T G  T
Sbjct:    4 LTLGHRGEASEPDFFRGVLGELVLTFLFVFIGVGAAMT-DGATTKGSTAGGDLTAVALGQALVVAVIATAGFHISGGHVNPAVTLSLAVGGHVTLFRSSLYIAAQMLASSAACFLLRWLTGGLAT 127          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP51_ARATH (Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14
Identity = 42/105 (40.00%), Postives = 55/105 (52.38%), Query Frame = 3
Query:  120 DALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLK 434
            +ALR  ++EFIST  FV A  GS M+  KL     + P                      N+SGGHVNPAVTF   V G IS+   + YW +Q++ S +ACL+LK
Sbjct:   20 NALRCYVSEFISTFFFVLAAVGSVMSSRKLMAGDVSGPFGVLIPAIANALALSSSVYISWNVSGGHVNPAVTFAMAVAGRISVPTAMFYWTSQMIASVMACLVLK 124          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP42_MAIZE (Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.626e-13
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 3
Query:  105 EATHPDA--LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            EA  PD   +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S++AC+LL++++ G  T
Sbjct:   16 EAPAPDVGCVRAVLAELVLTFLFVFTGVSASMAAGAGGKPGEAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGILVRGHITKLRALLYVAAQLLASSLACILLRYLSGGMVT 136          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP51_MAIZE (Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.124e-13
Identity = 47/128 (36.72%), Postives = 65/128 (50.78%), Query Frame = 3
Query:   69 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTH-NGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNG 449
            M   N+ V   R  + P +LR+ LAEFIST +FVF   GS ++   LT  +  ++                       ++SGGHVNPAVTF   +GG I +   + YW +QLLG+T ACL L   + G
Sbjct:    1 MASNNLLVDLKRCFSAP-SLRSYLAEFISTFLFVFTAVGSAISARMLTTPDVTSSAGPLVATAVAQAFGLFAAVLIAADVSGGHVNPAVTFAYAIGGRIGVPSAMFYWASQLLGATFACLSLNLFSAG 127          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP41_MAIZE (Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.732e-13
Identity = 43/112 (38.39%), Postives = 59/112 (52.68%), Query Frame = 3
Query:  126 LRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            +RA LAE + T +FVF G  + MA       G   P +                     ++SGGH+NPAVT G  V G+I+ LR +LY  AQLL S+ AC+LL+F++ G  T
Sbjct:   23 VRAVLAELVLTFLFVFTGVSAAMAAGSDGKPGDAMPMATLAAVAIAHALAAGVLVTAGFHVSGGHLNPAVTVGLMVRGHITKLRAVLYVAAQLLASSAACVLLRFLSGGMVT 134          
BLAST of CB610538 vs. ExPASy Swiss-Prot
Match: TIP41_ORYSJ (Probable aquaporin TIP4-1 OS=Oryza sativa subsp. japonica GN=TIP4-1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 5.232e-12
Identity = 42/119 (35.29%), Postives = 58/119 (48.74%), Query Frame = 3
Query:  105 EATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTP-SXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVTNGHTT 458
            E      +RA LAE + T +FVF G  + MA       GA  P +                     ++SGGH+NPAVT      G+I+  R  LY  AQLL S++AC+LL+++T G  T
Sbjct:   12 EVVDAGCVRAVLAELVLTFVFVFTGVAATMAAGVPEVAGAAMPMAALAGVAIATALAAGVLVTAGFHVSGGHLNPAVTVALLARGHITAFRSALYVAAQLLASSLACILLRYLTGGMAT 130          
The following BLAST results are available for this feature:
BLAST of CB610538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
TIP32_ORYSJ5.402e-1744.14Probable aquaporin TIP3-2 OS=Oryza sativa subsp. j... [more]
TIP51_ORYSJ7.055e-1740.54Probable aquaporin TIP5-1 OS=Oryza sativa subsp. j... [more]
TIP43_MAIZE1.572e-1637.60Aquaporin TIP4-3 OS=Zea mays GN=TIP4-3 PE=2 SV=1[more]
TIP51_ARATH2.509e-1440.00Probable aquaporin TIP5-1 OS=Arabidopsis thaliana ... [more]
TIP42_MAIZE1.626e-1338.02Aquaporin TIP4-2 OS=Zea mays GN=TIP4-2 PE=2 SV=1[more]
TIP51_MAIZE2.124e-1336.72Aquaporin TIP5-1 OS=Zea mays GN=TIP5-1 PE=2 SV=1[more]
TIP41_MAIZE4.732e-1338.39Aquaporin TIP4-1 OS=Zea mays GN=TIP4-1 PE=2 SV=1[more]
TIP41_ORYSJ5.232e-1235.29Probable aquaporin TIP4-1 OS=Oryza sativa subsp. j... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IVaF_F08 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IVaF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610538 ID=CB610538; Name=CB610538; organism=Citrus sinensis; type=EST; length=466bp
GGGGACACTTACGTGAACTAGTAGTAATCACACCCCAAAGGTTCAATCTG
ATTCGTTTGATCTCCATCATGCCGATCAGAAACATTGCCGTTGGCCATCC
CCGTGAGGCGACTCATCCAGATGCCCTAAGGGCAGCCCTAGCAGAGTTCA
TCTCAACTCTAATATTTGTCTTTGCCGGTGAAGGCTCGGGCATGGCCTTC
AACAAGCTCACTCACAACGGCGCCAACACCCCCTCCGGCCTCGTCGCCGC
CTCTGTTGCTCACGCTTTCGCCCTTTTCGTTGCTGTCGCCGTTGGCGCCA
ACATTTCCGGTGGCCACGTTAATCCTGCTGTCACCTTTGGCGCCTTCGTT
GGAGGTAACATCTCCCTTCTACGAGGCATCCTCTACTGGATCGCCCAGCT
TCTTGGATCCACCGTCGCATGCTTGCTTCTTAAGTTCGTTACCAACGGCC
ATACCACATCTGCTTT
back to top