CB610598

Overview
NameCB610598
Unique NameCB610598
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1856 contig Csv1_Contig1856:509..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_XANOM (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 1
Query:    4 VTKDPYVDAQDXKRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSG-LASYVAN-------------QIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            V KD        +RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G + K  D G +++Y  N               D S+ WKD++W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA DG+AGV
Sbjct:  130 VLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNASLRRMLQAVTHPRWAWDVGVLGKPHDLGNISAYRGNPTGLQDYIGWLGANFDPSIAWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAADGQAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_XANCB (L-lactate dehydrogenase [cytochrome] OS=Xanthomonas campestris pv. campestris (strain B100) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 75/215 (34.88%), Postives = 112/215 (52.09%), Query Frame = 1
Query:    4 VTKDPYVDAQDXKRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDD-----------SGLASYV---ANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            V KD        +RA+ AG   +  TVD P  G R  D  +    P     +  + +        +G + K  D           +GL  Y+   A   D S++WKD++W++   + P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + LALGA  V +GR   ++LA  G+AGV
Sbjct:  130 VLKDRGFMRNALERAKAAGVTTLVFTVDMPTPGARYRDAHSGMSGPNAPLRRMLQAMTHPRWAWDVGLLGKPHDLGNISTYRGSPTGLQDYIGWLAANFDPSISWKDLEWIREFWTGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGELKILADSGIRSGLDVVRMLALGADAVLLGRAFVYALAAGGQAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_VIBPA (L-lactate dehydrogenase [cytochrome] OS=Vibrio parahaemolyticus GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNYEG-------LYIGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D+ +    P     + ++        L +G + K  D G  S              ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +T  AL  +  A KG + +F+D G+R G DV + LALGA    +GR   ++LA  G AGV
Sbjct:  142 ERAKAAGVTTLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVFQAMRHPSWALDVGLLGKPHDLGNISTYRGEPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMVIKGILDEEDAKDAVRFGADGIVVSNHGGRQLDGVLSTAKALPSIADAVKGDLKIFVDSGIRTGLDVVRMLALGADCTLLGRSFVYALAAQGGAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCM (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae serotype O1 (strain M66-2) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG K +  TVD P  G R  D+ +    P     +  + +        +G + K  D G  S              ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV
Sbjct:  142 ERAKAAGVKNLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVLQAMAHPSWAWDVGLLGKPHDLGNISKYRGSPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_VIBCH (L-lactate dehydrogenase [cytochrome] OS=Vibrio cholerae GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 72/203 (35.47%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNYEGLY-------IGKMDKTDDSGLAS--------------YVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG K +  TVD P  G R  D+ +    P     +  + +        +G + K  D G  S              ++    D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V +TV AL  +  A KG + + +D G+R G DV + LALGA    +GR   ++LA  G AGV
Sbjct:  142 ERAKAAGVKNLVFTVDMPVPGARYRDMHSGMSGPNAAMRRVLQAMAHPSWAWDVGLLGKPHDLGNISKYRGSPTKLEDYIGWLGANFDPSISWKDLEWIRDFWDGPMIIKGILDTEDAKDAVRFGADGIVVSNHGGRQLDGVLSTVQALPAIADAVKGDLKILVDSGIRTGLDVVRMLALGADCTMLGRSFIYALAAQGRAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_SALTY (L-lactate dehydrogenase [cytochrome] OS=Salmonella typhimurium GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 73/206 (35.44%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV
Sbjct:  142 ERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_SALSV (L-lactate dehydrogenase [cytochrome] OS=Salmonella schwarzengrund (strain CVM19633) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 73/206 (35.44%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV
Sbjct:  142 ERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_SALPK (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A (strain AKU_12601) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 73/206 (35.44%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV
Sbjct:  142 ERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_SALPB (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 73/206 (35.44%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV
Sbjct:  142 ERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGV 344          
BLAST of CB610598 vs. ExPASy Swiss-Prot
Match: LLDD_SALPA (L-lactate dehydrogenase [cytochrome] OS=Salmonella paratyphi A GN=lldD PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.177e-28
Identity = 73/206 (35.44%), Postives = 111/206 (53.88%), Query Frame = 1
Query:   40 KRAERAGFKAIDLTVDTPRLGRREADIKNRFVLPPHLTLKNY------------EGL------------YIGKMDKTDDSGLASYVANQIDRSLNWKDVKWLQTITSLPILVKGVLTAEDASLAIQYGAAGIIVSNHGARQLDYVPATVMALEEVVQAAKGRVPVFLDGGVRRGTDVFKALALGASGVFVGRPVPFSLAVDGEAGV 585
            +RA+ AG   +  TVD P  G R  D  +  +  P+  ++ Y             GL            Y+GK    +D     ++AN  D S++WKD++W++     P+++KG+L  EDA  A+++GA GI+VSNHG RQLD V ++  AL  +  A KG + +  D G+R G DV + +ALGA  V +GR   ++LA  G+AGV
Sbjct:  142 ERAKAAGCSTLVFTVDMPTPGARYRDAHSG-MSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLED--YIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLYALATAGKAGV 344          
The following BLAST results are available for this feature:
BLAST of CB610598 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
LLDD_XANOM7.177e-2834.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_XANCB7.177e-2834.88L-lactate dehydrogenase [cytochrome] OS=Xanthomona... [more]
LLDD_VIBPA7.177e-2835.47L-lactate dehydrogenase [cytochrome] OS=Vibrio par... [more]
LLDD_VIBCM7.177e-2835.47L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_VIBCH7.177e-2835.47L-lactate dehydrogenase [cytochrome] OS=Vibrio cho... [more]
LLDD_SALTY7.177e-2835.44L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALSV7.177e-2835.44L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPK7.177e-2835.44L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPB7.177e-2835.44L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]
LLDD_SALPA7.177e-2835.44L-lactate dehydrogenase [cytochrome] OS=Salmonella... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_G06 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_G06 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610598 ID=CB610598; Name=CB610598; organism=Citrus sinensis; type=EST; length=592bp
GGGGTGACCAAGGACCCGTATGTGGACGCACAGGATCNAAAAAGAGCTGA
AAGGGCCGGTTTTAAGGCGATTGATCTTACCGTCGATACTCCAAGGCTTG
GCCGTCGGGAAGCTGATATTAAGAACAGATTTGTTTTGCCGCCACATCTG
ACTTTGAAGAACTATGAGGGCTTGTATATTGGCAAGATGGATAAGACTGA
TGACTCTGGATTAGCTTCGTATGTTGCCAACCAAATTGACCGGTCACTGA
ACTGGAAGGATGTGAAGTGGCTTCAAACAATCACCTCACTGCCAATACTC
GTGAAGGGTGTTCTTACTGCTGAGGATGCAAGTCTAGCAATACAATATGG
AGCTGCAGGAATCATTGTATCCAATCACGGAGCGCGCCAACTAGATTATG
TCCCTGCAACTGTTATGGCTTTGGAAGAGGTTGTTCAAGCTGCAAAAGGC
CGAGTTCCTGTTTTCCTTGATGGTGGGGTTCGTCGTGGAACCGATGTCTT
CAAGGCTTTGGCTCTAGGAGCATCTGGAGTATTTGTTGGAAGGCCAGTAC
CATTCTCGCTGGCAGTTGATGGAGAGGCTGGTGTGAGAAAAG
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