CB610607

Overview
NameCB610607
Unique NameCB610607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:8..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL6_ARATH (Agamous-like MADS-box protein AGL6 OS=Arabidopsis thaliana GN=AGL6 PE=1 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.449e-46
Identity = 112/232 (48.28%), Postives = 149/232 (64.22%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSFFHALGXEPTLQIGYQ 721
            MGRGRVE+ RIENKINR+VTF+KRRNGLLKKAYELSVL D EVALIIFS+ GKLYEF  S  +  T+ERY +C Y     N    E   S  QE  KLK++YE+L R+ RNLLGE+LG +  KEL++LERQL+ +L   R  +TQ M++ + +L+ KE+ L + NK LK +  T  H AF   Q +      ++  +P+  +  + ++P+ P           EP LQIG+Q
Sbjct:    1 MGRGRVEMKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF-GSVGIESTIERYNRC-YNCSLSNNKPEETTQSWCQEVTKLKSKYESLVRTNRNLLGEDLGEMGVKELQALERQLEAALTATRQRKTQVMMEEMEDLRKKERQLGDINKQLKIKFETEGH-AFKTFQDLWANSAASVAGDPNNSE--FPVEPSHPN----VLDCNTEPFLQIGFQ 223          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.947e-44
Identity = 97/185 (52.43%), Postives = 134/185 (72.43%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYG-----APEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLR 553
            MGRGRV+L RIENKINR+VTF+KRR GLLKKA+E+SVL D EVAL++FS+ GKL+E+ + S M K LERY++ +Y      APE +V+   ++     EY +LKA+ E L+R+QR+ LGE+L  ++SKEL++LE+QLD +LK IRS + Q M D++ ELQ KE+ + E N    K +K+R   LR
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM-----EYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSINELQRKEKAIQEQNSMLSKQIKEREKILR 180          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.733e-44
Identity = 96/178 (53.93%), Postives = 129/178 (72.47%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ--------QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 535
            MGRG+V+L RIENKINR+VTF+KRR+GLLKKA E+SVL D EVALIIFS  GKLYE+ + S M K LERY++ +Y        A + L+S++         EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYEYATDSCMDKILERYERYSY--------AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK 170          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 1.500e-43
Identity = 103/211 (48.82%), Postives = 140/211 (66.35%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYG-----APEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAED 631
            MGRGRVEL RIENKINR+VTF+KRR GLLKKA E+SVL D EV+LI+FS+ GKL+E+ S S M K LERY++ +Y      AP+ +V+A+    +   EY +LKA+ E L+R+QR+ LGEEL P++ K+L++LE+QL+ +LK IRS + Q M ++L  LQ KE+ + E N    K +K+R   LR             Q    QLN S +D
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRTGLLKKAQEISVLCDAEVSLIVFSHKGKLFEYSSESCMEKVLERYERYSYAERQLIAPDSHVNAQ---TNWSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLNHLQRKEKEIQEENSMLTKQIKERENILRTK-----------QTQCEQLNRSVDD 197          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD15_ORYSJ (MADS-box transcription factor 15 OS=Oryza sativa subsp. japonica GN=MADS15 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.700e-43
Identity = 99/209 (47.37%), Postives = 138/209 (66.03%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ--------QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAE 628
            MGRG+V+L RIENKINR+VTF+KRRNGLLKKA+E+SVL D EVA I+FS  GKLYE+ + S M K LERY++ +Y        A +AL+S++         EY KLKA+ E +Q+  ++L+GE+L  LN KEL+ LE+QL+ SLK I S ++  ML++++ELQ KE+ L E NK L Q+ +  R     G Q +  +    +Q    A+
Sbjct:    1 MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSY--------AEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKAL-QKELVERQKNVRGQQQVGQWDQTQVQAQAQAQ 200          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 7.444e-43
Identity = 94/185 (50.81%), Postives = 133/185 (71.89%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYG-----APEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEAN----KTLKQRTMTLR 553
            MGRGRV+L RIENKINR+VTF+KRR GLLKKA+E+SVL D EVAL++FS+ GKL+E+ + S M K LERY++ +Y      APE +V+   ++     EY +LKA+ E L+R+QR+ LGE+L  ++ KEL++LE+QLD +LK IR+ + Q M +++ ELQ KE+ + E N    K +K+R   LR
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYSTDSCMEKILERYERYSYAERQLIAPESDVNTNWSM-----EYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESINELQKKEKAIQEQNSMLSKQIKEREKILR 180          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.722e-43
Identity = 94/178 (52.81%), Postives = 128/178 (71.91%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ--------QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 535
            MGRG+V+L RIEN INR+VTF+KRR+GLLKKA E+SVL D EVALIIFS  GKLY++ + S M K LERY++ +Y        A + L+S++         EY KLKA+ E +Q+ Q++L+GE+L  LN KEL+ LE+QL+ SLK IRS ++Q ML+++ ELQ KE+ L E NK L++
Sbjct:    1 MGRGKVQLKRIENTINRQVTFSKRRSGLLKKANEISVLCDAEVALIIFSTKGKLYKYATDSCMDKILERYERYSY--------AEKVLISAESDTQGNWCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQK 170          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.829e-42
Identity = 95/173 (54.91%), Postives = 123/173 (71.10%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNY---GAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 535
            MGRG V+L RIENKINR+VTF+KRRNGLLKKA+E+SVL D +VALI+FS  GKLYEF S SSM   LERYQ+ ++      EPN   +E   +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE---NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.829e-42
Identity = 95/173 (54.91%), Postives = 123/173 (71.10%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNY---GAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQ 535
            MGRG V+L RIENKINR+VTF+KRRNGLLKKA+E+SVL D +VALI+FS  GKLYEF S SSM   LERYQ+ ++      EPN   +E   +   EY  LK++ +ALQ+SQR LLGE+L  L  KEL+ LE QL+ SLK IRS + Q + ++++ELQ KE+ L   N  L++
Sbjct:    1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSHSSMEGILERYQRYSFDERAVLEPNTEDQE---NWGDEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQK 170          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.967e-41
Identity = 86/171 (50.29%), Postives = 124/171 (72.51%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            MGRGRV+L RIENKINR+VTF+KRR+GLLKKA+E+SVL D EV LI+FS  GKL+E+ + S M + LERY++ ++   +   +   + +S   E+ KLKAR E LQR+Q++ +GE+L  L+ KEL++LE QLD +LK IRS + Q M ++++ LQ K++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERILERYERYSFAEKQLVPTDHTSPVSWTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKKDRALQEQNNQLSKK 171          
The following BLAST results are available for this feature:
BLAST of CB610607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL6_ARATH1.449e-4648.28Agamous-like MADS-box protein AGL6 OS=Arabidopsis ... [more]
AP1_SINAL3.947e-4452.43Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
MAD14_ORYSJ6.733e-4453.93MADS-box transcription factor 14 OS=Oryza sativa s... [more]
CAL_ARATH1.500e-4348.82Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD15_ORYSJ5.700e-4347.37MADS-box transcription factor 15 OS=Oryza sativa s... [more]
AP1_ARATH7.444e-4350.81Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
MAD14_ORYSI9.722e-4352.81MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD18_ORYSJ2.829e-4254.91MADS-box transcription factor 18 OS=Oryza sativa s... [more]
MAD18_ORYSI2.829e-4254.91MADS-box transcription factor 18 OS=Oryza sativa s... [more]
AGL8_SOLLC6.967e-4150.29Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_E11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610607 ID=CB610607; Name=CB610607; organism=Citrus sinensis; type=EST; length=765bp
GGGGGAAGAAAGAAACGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGA
TGAGGATAGAGAACAAGATCAACAGGCGAGTGACCTTTGCAAAGAGAAGA
AATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTAGTGATGTTGA
GGTTGCTCTCATCATTTTCTCCAATAGTGGAAAGCTGTACGAGTTTTGCA
GTAGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTAT
GGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGCTAAGTAGCCA
GCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCC
AAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTT
GAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAAC
AAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAAC
AGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTA
AGGCACGCCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAA
CACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAAC
CAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGGNNGTGAACCN
ACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGC
AGGCCCGAGTCTGAA
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