CB610607

Overview
NameCB610607
Unique NameCB610607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:8..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.027e-40
Identity = 86/171 (50.29%), Postives = 123/171 (71.93%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            MGRGRV+L RIENKINR+VTF+KRR+GLLKKA+E+SVL D EV LI+FS  GKL+E+ + S M + LERY++ ++   +   +   +  S   E+ KLKAR E LQR+Q++ +GE+L  LN KEL++LE QLD +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYANDSCMERLLERYERYSFAERQLVPTDHTSPGSWTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.648e-40
Identity = 87/173 (50.29%), Postives = 125/173 (72.25%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ--QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            MGRGRV+L RIENKINR+VTF+KRR+GLLKKA+E+SVL D EVALI+FS+ GKL+E+ + S M + LERY +  Y   +  +  R+   S     E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QLD ++K IRS + Q M ++++ LQ K++ L + N +L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSSKGKLFEYSTDSCMERILERYDRYLYS--DKQLVGRDVSQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESISALQKKDKALQDHNNSLLKK 171          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 7.703e-40
Identity = 87/173 (50.29%), Postives = 124/173 (71.68%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ--QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            MGRGRV+L RIENKINR+VTF+KRR+GLLKKA+E+SVL D EVAL+IFS+ GKL+E+ + S M K LERY +  Y   +  +  R+   S     E+ KLKAR E L++++RN +GE+L  L+ KEL+SLE QL  ++K IRS + Q M ++++ LQ K+++L + N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALVIFSSKGKLFEYSTDSCMEKILERYDRYLYS--DKQLVGRDISQSENWVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESISALQKKDKVLQDHNNALLKK 171          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL13_ARATH (Agamous-like MADS-box protein AGL13 OS=Arabidopsis thaliana GN=AGL13 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.716e-39
Identity = 90/175 (51.43%), Postives = 124/175 (70.86%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQ---QEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRT 541
            MGRG+VE+ RIENKI R+VTF+KR++GLLKKAYELSVL D EV+LIIFS  GKLYEF S+  + +T+ERY +C     + N+   + L  +Q   QE  KLK +YE+L R+ RNL+GE+L  ++ KEL++LERQL+ +L   R  +TQ M++ + EL+ KE+ L + N  LK  T
Sbjct:    1 MGRGKVEVKRIENKITRQVTFSKRKSGLLKKAYELSVLCDAEVSLIIFSTGGKLYEF-SNVGVGRTIERYYRC-----KDNLLDNDTLEDTQGLRQEVTKLKCKYESLLRTHRNLVGEDLEGMSIKELQTLERQLEGALSATRKQKTQVMMEQMEELRRKERELGDINNKLKLET 169          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.478e-38
Identity = 84/171 (49.12%), Postives = 120/171 (70.18%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            MGRGRV+L RIENKINR+VTF+KRR+GLLKKA+E+SVL D EV LI+FS  GKL+E+ + S M + LERY++ ++   +   +   +  S   E  KLKAR E LQR+++  +GE+L  LN KEL++LE QL  +LK IRS + Q M ++++ LQ +++ L E N  L ++
Sbjct:    1 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYATDSCMERLLERYERYSFAEKQLVPTDHTSPGSWTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKK 171          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD21_ORYSJ (MADS-box transcription factor 21 OS=Oryza sativa subsp. japonica GN=MADS21 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.749e-36
Identity = 93/249 (37.35%), Postives = 141/249 (56.63%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNY----GAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDSF---FHALGXEPTLQIGYQPADPISVVTA 751
            MGRG++E+ RIENK +R+VTF KRRNGLLKKAYEL++L D E+ALI+FS+ G+LYEF + +S   T+ERY+K +      AP  +V++ +     QQE  K++ + + LQ + R+L+GE +G + +KEL+SLE +L+  + +IRS + + +   +  +Q +E  L   N  L+ +      A     Q              +AED      PA   G S      AL      +  YQPA P+S++ A
Sbjct:    1 MGRGKIEIKRIENKTSRQVTFCKRRNGLLKKAYELAILCDAEIALIVFSSRGRLYEFSNVNSTRSTIERYKKASASTSGSAPVIDVNSHQYF---QQEAAKMRHQIQTLQNANRHLIGESIGNMTAKELKSLENRLEKGISRIRSKKHELLFSEIEYMQKREADLQNENMFLRAKVAEAERAEHDDQQ--------------AAEDDEMAPAPAVGGGSSSGTELEALPATFDTREYYQPAPPVSMLAA 232          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.461e-35
Identity = 78/178 (43.82%), Postives = 116/178 (65.17%), Query Frame = 2
Query:    5 EERNEKKMGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            +  + KK+GRG++E+ RIEN  NR+VTF KRRNGLLKKAYELSVL D EVAL+IFS  G+LYE+ +++S+  T+ERY+K    A  P           QQE  KL+ +   +Q S R+++GE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:    9 DAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAK 185          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.273e-34
Identity = 88/244 (36.07%), Postives = 136/244 (55.74%), Query Frame = 2
Query:   17 EKKMGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEGYQVNTLQLNPSAEDCGYGLKPAQP-QGDSFFHALGXEPTLQIGYQPADPISVV 745
            ++K+GRG++E+ RIEN  NR+VTF KRRNGLLKKAYELSVL D EVALI+FS  G+LYE+ +++S+  T+ERY+K    +P  +  +       QQE  KL+    ++Q++ RN++GE LG L  ++L+ LE +L+  + +IRS + + +   +  +Q KE  L   N+ L+ +      A               + L P + D  Y L P Q   G ++    G +P      Q    + +V
Sbjct:   14 QRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEY-ANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQ------------QHMNLMPGSSD--YELAPPQSFDGRNYIQLNGLQPNNHYSRQDQTALQLV 242          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.662e-34
Identity = 80/179 (44.69%), Postives = 116/179 (64.80%), Query Frame = 2
Query:    2 GEERNEKKMGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            GE   ++K GRG++E+ RIEN  NR+VTF KRRNGLLKKAYELSVL D EVALI+FS+ G+LYE+ S++S+  T+ERY+K           A       QQE  KL+ +  ++Q S R L+GE +G ++ KEL +LE +LD S+ +IRS + + +   +  +Q +E  L   N+ L+ +
Sbjct:    9 GESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEY-SNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAK 186          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.703e-34
Identity = 78/175 (44.57%), Postives = 114/175 (65.14%), Query Frame = 2
Query:   14 NEKKMGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQR 538
            + KK+GRG++E+ RIEN  NR+VTF KRRNGLLKKAYELSVL D EVAL+IFS  G+LYE+ +++S+  T+ERY+K    A  P           QQE  KL+ +   +Q   R++LGE LG LN KEL++LE +L+  + ++RS + + ++  +  +Q +E  L   N  L+ +
Sbjct:   12 SSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEY-ANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSK 185          
The following BLAST results are available for this feature:
BLAST of CB610607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL8_SOLTU2.027e-4050.29Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH2.648e-4050.29Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SINAL7.703e-4050.29Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AGL13_ARATH1.716e-3951.43Agamous-like MADS-box protein AGL13 OS=Arabidopsis... [more]
AGL8_SOLCO2.478e-3849.12Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
MAD21_ORYSJ6.749e-3637.35MADS-box transcription factor 21 OS=Oryza sativa s... [more]
AGL1_ARATH7.461e-3543.82Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AG_PANGI1.273e-3436.07Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_BRANA1.662e-3444.69Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL5_ARATH3.703e-3444.57Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_E11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610607 ID=CB610607; Name=CB610607; organism=Citrus sinensis; type=EST; length=765bp
GGGGGAAGAAAGAAACGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGA
TGAGGATAGAGAACAAGATCAACAGGCGAGTGACCTTTGCAAAGAGAAGA
AATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTAGTGATGTTGA
GGTTGCTCTCATCATTTTCTCCAATAGTGGAAAGCTGTACGAGTTTTGCA
GTAGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTAT
GGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGCTAAGTAGCCA
GCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCC
AAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTT
GAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAAC
AAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAAC
AGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTA
AGGCACGCCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAA
CACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAAC
CAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGGNNGTGAACCN
ACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGC
AGGCCCGAGTCTGAA
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