CB610607

Overview
NameCB610607
Unique NameCB610607
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:8..775. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.046e-20
Identity = 66/190 (34.74%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALLSSQQEYL-KLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFAGLQLMEG 589
            M RG++++ RIEN+ NR+VT++KRRNGL KKA+ELSVL D +V++I+ S++ KL+E+ S ++  K L ++YQK         V    +     QE+L KL      L+R  R  +GE L  L  +++ +L   +D SLK IR  + + + + +   + K + + E ++ L       R     GL   EG
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKA------VGVDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEG 184          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.330e-20
Identity = 70/203 (34.48%), Postives = 111/203 (54.68%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERY--QKCNYGA--PEPNVSAREAL---------------LSSQQEYLKLKARYEALQRSQ---RNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAAFA 568
            M R R E+ RIE+   R+VTF+KRR GL KKA EL+VL D +VAL++FS++GKL +F +SS+M + +++Y     N G    +P++     L               L  Q E+ K  +  E L  +    R + GEEL  L+ +EL+ +E+ L+  L+++  T+ Q  +  ++ELQ K   L+E N  L+ +   +  A  A
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQF-ASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQLAEENMRLRDQMPQVPTAGLA 202          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AP32_ASAEU (MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.740e-19
Identity = 69/203 (33.99%), Postives = 109/203 (53.69%), Query Frame = 2
Query:  104 GLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSS-SMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLKQRTMTLRHAA-------------FAGLQLMEGYQV---NTLQLNPSAEDCGYGLKPAQP 661
            GLLKKA EL++L D ++ +IIFS+SGK++EF S   SM + ++RYQK + G   P    ++       E  ++K   + LQ + R+  GE+L  L   E+  LE+QL++S+ ++RS + Q +   L  L+ KE +L E N+ L  R +   HAA               G+   + +Q    + LQL+P      + L+PAQP
Sbjct:    2 GLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLS-GNCAPVYDNQQVYC----EITRMKNEIDKLQATMRHFAGEDLTSLTMNEMLQLEQQLEISVNKVRSRKEQLLQQQLDNLRRKENMLEEQNREL-YRVIQDHHAASMEQKMVDPSMLDHFGVFYQDDHQAARSSMLQLSPQLHP--FRLQPAQP 196          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: AP3_ARATH (Floral homeotic protein APETALA 3 OS=Arabidopsis thaliana GN=AP3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.859e-18
Identity = 57/169 (33.73%), Postives = 99/169 (58.58%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTL-ERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 529
            M RG++++ RIEN+ NR+VT++KRRNGL KKA+EL+VL D  V++I+FS+S KL+E+ S ++  K + + YQ  +    + +V A +     Q+   KL      L+   +  LGE L  L+ +EL  LE +++ + K +R  + + + + +   + K +   +  K L
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELTVLCDARVSIIMFSSSNKLHEYISPNTTTKEIVDLYQTIS----DVDVWATQ-YERMQETKRKLLETNRNLRTQIKQRLGECLDELDIQELRRLEDEMENTFKLVRERKFKSLGNQIETTKKKNKSQQDIQKNL 164          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: CMB2_DIACA (MADS-box protein CMB2 OS=Dianthus caryophyllus GN=CMB2 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.288e-18
Identity = 57/169 (33.73%), Postives = 99/169 (58.58%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSS-SMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 529
            MGRG++E+ +IENK NR+VTF+KRRNG++KKA EL+VL D +V+L++ S++ KL+ + S   S+ K  + YQK      E     R+     Q+++ K+      L+R     +G +L  L   EL +L+++++ ++ QIR+ +   + +     + K + L E +  L
Sbjct:    1 MGRGKLEIRKIENKTNRQVTFSKRRNGIMKKAQELTVLCDAKVSLLMISSTHKLHHYLSPGVSLKKMYDEYQKI-----EGVDLWRKQWERMQEQHRKVLELNSLLRREISRRMGGDLEGLTLVELSALQQEMEEAIIQIRNKKYHTIKNQTGTTRKKIKNLEERHTDL 164          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MAD32_ORYSJ (MADS-box transcription factor 32 OS=Oryza sativa subsp. japonica GN=MADS32 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.548e-16
Identity = 53/158 (33.54%), Postives = 90/158 (56.96%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSS--SMVKTLERYQKCNYGAPEPNVSAREALLSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQH 493
            MGRGR E+ RIEN   R+ TF KRR+GL KKA EL+VL D ++ L++FS SGKLY F S +  S+ + +ERY+   +     ++         + E  K+ +  + L++  R +  ++        LE+LE  L+ +++++RS + + +   +  LQ+
Sbjct:    1 MGRGRSEIKRIENPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYHFLSPTVPSVREFVERYEATTHTKVWADIRQER-----RAELEKVGSMCDLLEKQLRFMTVDDGEEYTVPSLEALEHNLEAAMRKVRSEKDRKIGGEICYLQN 153          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREA 286
            MGR ++++ RI ++ NR+VTF KR+ GL+KKAYELSVL D E+ALIIF++S KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREA 286
            MGR ++++ RI ++ NR+VTF KR+ GL+KKAYELSVL D E+ALIIF++S KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREA 286
            MGR ++++ RI ++ NR+VTF KR+ GL+KKAYELSVL D E+ALIIF++S KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
BLAST of CB610607 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.495e-14
Identity = 43/87 (49.43%), Postives = 63/87 (72.41%), Query Frame = 2
Query:   26 MGRGRVELMRIENKINRRVTFAKRRNGLLKKAYELSVLSDVEVALIIFSNSGKLYEFCSSSSMVKTLERYQKCNYGAPEPNVSAREA 286
            MGR ++++ RI ++ NR+VTF KR+ GL+KKAYELSVL D E+ALIIF++S KL+++ +S+ M K L +Y + N    EP+ S   A
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQY-ASTDMDKVLLKYTEYN----EPHESRTNA 82          
The following BLAST results are available for this feature:
BLAST of CB610607 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
DEFA_ANTMA1.046e-2034.74Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD55_ORYSJ2.330e-2034.48MADS-box transcription factor 55 OS=Oryza sativa s... [more]
AP32_ASAEU5.740e-1933.99MADS-box protein AeAP3-2 (Fragment) OS=Asarum euro... [more]
AP3_ARATH4.859e-1833.73Floral homeotic protein APETALA 3 OS=Arabidopsis t... [more]
CMB2_DIACA8.288e-1833.73MADS-box protein CMB2 OS=Dianthus caryophyllus GN=... [more]
MAD32_ORYSJ4.548e-1633.54MADS-box transcription factor 32 OS=Oryza sativa s... [more]
MEF2D_XENLA2.495e-1449.43Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT2.495e-1449.43Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE2.495e-1449.43Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN2.495e-1449.43Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_E11 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_E11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610607 ID=CB610607; Name=CB610607; organism=Citrus sinensis; type=EST; length=765bp
GGGGGAAGAAAGAAACGAGAAGAAAATGGGAAGGGGTAGGGTTGAGTTGA
TGAGGATAGAGAACAAGATCAACAGGCGAGTGACCTTTGCAAAGAGAAGA
AATGGCCTTTTGAAGAAAGCTTATGAGCTTTCCGTTCTTAGTGATGTTGA
GGTTGCTCTCATCATTTTCTCCAATAGTGGAAAGCTGTACGAGTTTTGCA
GTAGTTCAAGCATGGTCAAAACGCTTGAGAGGTACCAGAAGTGCAACTAT
GGAGCACCAGAACCGAATGTGTCCGCAAGGGAGGCCCTGCTAAGTAGCCA
GCAAGAATATCTGAAGCTTAAAGCACGATATGAAGCCCTACAGAGATCCC
AAAGGAATCTCCTTGGAGAAGAACTTGGCCCTCTAAACAGCAAAGAGCTT
GAGTCACTTGAAAGGCAGCTTGATATGTCATTGAAGCAGATCAGATCAAC
AAGAACTCAGTACATGCTGGATACCCTTACTGAACTGCAACATAAGGAAC
AGTTGCTGAGCGAAGCAAATAAGACCCTCAAACAAAGGACGATGACGCTA
AGGCACGCCGCTTTTGCTGGTTTGCAGTTGATGGAGGGATACCAAGTGAA
CACACTTCAATTGAATCCTAGTGCAGAAGATTGTGGTTATGGGCTTAAAC
CAGCTCAACCTCAGGGCGATAGCTTCTTTCACGCCTTGGGNNGTGAACCN
ACATTGCAAATTGGATACCAGCCTGCGGACCCAATATCGGTTGTCACAGC
AGGCCCGAGTCTGAA
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