CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_BOVIN (60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 7.241e-53
Identity = 99/155 (63.87%), Postives = 122/155 (78.71%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GG  HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  239 KLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTVEEKKAFMGPLK 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 206.453 bits (524), Expect = 9.457e-53
Identity = 99/155 (63.87%), Postives = 122/155 (78.71%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GG  HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  239 KLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.235e-52
Identity = 98/157 (62.42%), Postives = 119/157 (75.80%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES----HSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 459
            GV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKKIY++G+A  E      +  TEFD TEK I PMGG  HYG+V  ++L++KGC  GP+KR +TLR+S+  QT R ALE+I LKFIDTSSKFGHG  Q  ++K KY+G  K+
Sbjct:  237 GVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 205.297 bits (521), Expect = 2.107e-52
Identity = 97/155 (62.58%), Postives = 119/155 (76.77%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKIY++G+           ++A T +D T+K ITP+GG PHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  239 KLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIYRIGRGLHMEDGKVVKNNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_KLULA (60S ribosomal protein L3 OS=Kluyveromyces lactis GN=RPL3 PE=3 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.130e-52
Identity = 97/152 (63.82%), Postives = 119/152 (78.29%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N K+Y++GK   E+++A TEFDRT+K ITPMGG  HYG +N D++++KG   G +KRVVTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  234 GTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKVYRVGKGDDEANAA-TEFDRTKKTITPMGGFVHYGAINNDFVILKGSIPGTRKRVVTLRKSLYTNTSRKALEEVTLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.329e-51
Identity = 95/155 (61.29%), Postives = 118/155 (76.13%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQES------HSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            +LPRKTH+GLRKVACIGAWHPARV  ++ARAGQ GYHHRTE+NKKI+++G+           ++A T +D T K ITP+GG PHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQ  QEK  + G  K
Sbjct:  239 KLPRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_MACFA (60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 3.973e-51
Identity = 98/155 (63.23%), Postives = 121/155 (78.06%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKA------SQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            +LPRKTHRGLRKVACIGA HPARV+F+VARAGQ GYHHRTE+NKKIYK+G+           ++A T++D ++K I P+GG  HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQ  +EK  + G LK
Sbjct:  239 KLPRKTHRGLRKVACIGARHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_CANGA (60S ribosomal protein L3 OS=Candida glabrata GN=RPL3 PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 97/152 (63.82%), Postives = 117/152 (76.97%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYHHRT +N KIY++GK   E ++A T FDRT+K I PMGG  HYG+VN D++++KG   G KKRVVTLR+SL   TSR A+EE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  234 GTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHHRTSINHKIYRIGKGDDEGNAA-TNFDRTKKTINPMGGFVHYGMVNNDFVMVKGSIPGCKKRVVTLRKSLYTNTSRKAVEEVTLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_YEAST (60S ribosomal protein L3 OS=Saccharomyces cerevisiae GN=RPL3 PE=1 SV=4)

HSP 1 Score: 199.519 bits (506), Expect = 1.156e-50
Identity = 95/152 (62.50%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTHRGLRKVACIGAWHPA V ++VARAGQ GYH RT +N KIY++GK   E++ A T FDRT+K ITPMGG  HYG +  D++++KGC  G +KR+VTLR+SL   TSR ALEE+ LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  234 GTKKLPRKTHRGLRKVACIGAWHPAHVMWSVARAGQRGYHSRTSINHKIYRVGKGDDEANGA-TSFDRTKKTITPMGGFVHYGEIKNDFIMVKGCIPGNRKRIVTLRKSLYTNTSRKALEEVSLKWIDTASKFGKGRFQTPAEKHAFMGTLK 384          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3B_SCHPO (60S ribosomal protein L3-B OS=Schizosaccharomyces pombe GN=rpl3b PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.180e-49
Identity = 95/152 (62.50%), Postives = 115/152 (75.66%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N KIY++G A  ++ +A T+FD TEK ITPMGG   YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQ   E  ++ G LK
Sbjct:  234 GTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_BOVIN7.241e-5363.8760S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=... [more]
RL3_HUMAN9.457e-5363.8760S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]
RL3_DICDI1.235e-5262.4260S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3L_BOVIN2.107e-5262.5860S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3_KLULA6.130e-5263.8260S ribosomal protein L3 OS=Kluyveromyces lactis G... [more]
RL3L_HUMAN2.329e-5161.2960S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_MACFA3.973e-5163.2360S ribosomal protein L3 OS=Macaca fascicularis GN... [more]
RL3_CANGA5.189e-5163.8260S ribosomal protein L3 OS=Candida glabrata GN=RP... [more]
RL3_YEAST1.156e-5062.5060S ribosomal protein L3 OS=Saccharomyces cerevisi... [more]
RL3B_SCHPO2.180e-4962.5060S ribosomal protein L3-B OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
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