CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6028 contig Csv1_Contig6028:117..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3A_SCHPO (60S ribosomal protein L3-A OS=Schizosaccharomyces pombe GN=rpl3a PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 2.180e-49
Identity = 95/152 (62.50%), Postives = 115/152 (75.66%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  RLPRKTHRGLRKVACIGAWHPA V +TVARAG  GY HRT++N KIY++G A  ++ +A T+FD TEK ITPMGG   YGVV  D++++ G   GP KRV+TLR+SLL  TSR ALE + LK+IDT+SKFGHGRFQ   E  ++ G LK
Sbjct:  234 GTKRLPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIG-AGDDAKNASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLK 384          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_DEBHA (60S ribosomal protein L3 OS=Debaryomyces hansenii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 2.847e-49
Identity = 95/152 (62.50%), Postives = 113/152 (74.34%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNG+HHRT +N K+Y++G A  ES  A TEFDRT+K I PMGG   YG V  D++L+KG   G KKR+VT+R+SL   TSR A E + LK+IDT+SKFG GRFQ   EK  + G LK
Sbjct:  234 GTKKLPRKTHRGLRKVACIGAWHPANVQWTVARAGQNGFHHRTSINHKVYRVGSAGDESSGA-TEFDRTKKTINPMGGFVRYGNVKNDFMLLKGSIPGVKKRIVTIRKSLYVDTSRRATENVNLKWIDTASKFGKGRFQTPAEKHAFLGTLK 384          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_NEUCR (60S ribosomal protein L3 OS=Neurospora crassa GN=rpl-3 PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.343e-49
Identity = 93/152 (61.18%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT +N KIY++GK   E  SA TE D T+K ITPMGG   YG +N D++++KG   G KKRV+TLR+S+   TSR ALE+++LK+IDTSS+FGHG FQ   EK ++ G LK
Sbjct:  235 GTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAED-SAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKALEKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLK 385          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_ASPFU (60S ribosomal protein L3 OS=Aspergillus fumigatus GN=rpl3 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 6.343e-49
Identity = 92/152 (60.53%), Postives = 116/152 (76.32%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLK 456
            G  +LPRKTH+GLRKVACIGAWHP+ V +TVARAGQ GYHHRT  N K++++GK S E + A T+FD ++K ITPMGG   YG V  DY+++KG   G KKRV+TLR++L  QTSR A E+++LK+IDTSSKFGHG FQ  +EK  + G LK
Sbjct:  235 GTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQMGYHHRTSCNHKVFRIGKGSDEGN-ASTDFDISKKQITPMGGFVRYGEVKNDYIMVKGSVPGVKKRVMTLRKTLYPQTSRRATEKVELKWIDTSSKFGHGAFQTPEEKRAFMGTLK 385          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_ENCCU (60S ribosomal protein L3 OS=Encephalitozoon cuniculi GN=RPL3-1 PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.013e-46
Identity = 89/153 (58.17%), Postives = 115/153 (75.16%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQRTQEKAKYYGRLKA 459
            GV + PRK+ +G+RKVACIGAWHP+RV +++ARAGQ G+H RTE NK++Y +G  S    +  TEFD TEK I+PMGG PHYG V  D++++KG  VG +KRVVTLR+SLL+Q    A EE+ +KF+DTSSK GHGRFQ + EK  +YG  KA
Sbjct:  230 GVRKQPRKSRKGIRKVACIGAWHPSRVMYSIARAGQMGFHRRTEKNKRVYMIGNGSS---NIKTEFDLTEKPISPMGGFPHYGEVRNDFIMVKGAVVGARKRVVTLRKSLLRQR---AGEELVIKFVDTSSKIGHGRFQTSAEKKAFYGARKA 376          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PIG (60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.520e-26
Identity = 54/95 (56.84%), Postives = 71/95 (74.74%), Query Frame = 1
Query:   10 RLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGK------ASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLI 276
            +LPRKTHRGLRKVACIGAWHPAR +F+VARAGQ GYHHRTE+NKKIYK+G+           ++  T++D ++K I P+G   HYG V  D++++
Sbjct:   36 KLPRKTHRGLRKVACIGAWHPARXAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNXXTDYDLSDKSINPLGRFVHYGEVTNDFVML 130          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THESM (50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 7.808e-23
Identity = 54/132 (40.91%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            GV     K  +G RKVA IG WHPARV +TV RAGQ G+HHRTE NK++ ++G+      +     +  + +ITP GG PHYGVV  D+++I G   G  KR++ +R ++     R   E  ++ +I   SK
Sbjct:  233 GVKLTSHKDSKGRRKVATIGPWHPARVMWTVPRAGQMGFHHRTEFNKRLLRIGE------NGKLTLNGEKIEITPNGGFPHYGVVKNDFIMIAGTIPGAIKRIIRMRPAVRPPAKRPPAEAPQITYISRESK 358          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRFU (50S ribosomal protein L3P OS=Pyrococcus furiosus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.875e-22
Identity = 49/132 (37.12%), Postives = 78/132 (59.09%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            G+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+     +  +   + TE +ITP GG PHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  238 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE-----NGKLKLDENTEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 364          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRAB (50S ribosomal protein L3P OS=Pyrococcus abyssi GN=rpl3p PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.610e-22
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            G+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+      +     D  E +ITP GG PHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  235 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRSDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 360          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRHO (50S ribosomal protein L3P OS=Pyrococcus horikoshii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.127e-21
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            G+     K  +G RKV  IG WHPARV +TV  AGQ G+HHRTE+NK++  +G+      +     D  E +ITP GG PHYG+V  D+++I G   G  KR++ +R ++     +  ++  ++ ++   SK
Sbjct:  236 GIKLRAHKDSKGRRKVGSIGPWHPARVMWTVPMAGQMGFHHRTELNKRLIAIGE------NGKLVIDGNEIEITPKGGFPHYGIVRGDFMMIAGSVPGAIKRIIRVRPAIRPPKKKPPVQRPQITYVSVESK 361          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3A_SCHPO2.180e-4962.5060S ribosomal protein L3-A OS=Schizosaccharomyces ... [more]
RL3_DEBHA2.847e-4962.5060S ribosomal protein L3 OS=Debaryomyces hansenii ... [more]
RL3_NEUCR6.343e-4961.1860S ribosomal protein L3 OS=Neurospora crassa GN=r... [more]
RL3_ASPFU6.343e-4960.5360S ribosomal protein L3 OS=Aspergillus fumigatus ... [more]
RL3_ENCCU1.013e-4658.1760S ribosomal protein L3 OS=Encephalitozoon cunicu... [more]
RL3_PIG1.520e-2656.8460S ribosomal protein L3 (Fragment) OS=Sus scrofa ... [more]
RL3_THESM7.808e-2340.9150S ribosomal protein L3P OS=Thermococcus sibiricu... [more]
RL3_PYRFU3.875e-2237.1250S ribosomal protein L3P OS=Pyrococcus furiosus G... [more]
RL3_PYRAB6.610e-2237.1250S ribosomal protein L3P OS=Pyrococcus abyssi GN=... [more]
RL3_PYRHO1.127e-2137.1250S ribosomal protein L3P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
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