CB610616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20 Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ + D E +ITP GG PHYG+V D+L+I+G G KR++ +R ++ + +E ++ ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19 Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396 R + +G WHPARV +TV +AGQ G+HHRTE NK++ +G+ + + E DITP GG PHYG++ D+L+I+G G KR++ +R ++ + +E ++ ++ SK Sbjct: 233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLNGNEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19 Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396 R V +G WHP RV +TV +AGQ G+HHRTE NK++ +G+ + + ++ E +ITP GG PHYG++ D+L+I+G G KR++ +R ++ + +E ++ +I SK Sbjct: 233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE-----NGKLKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17 Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R V IG W P+R +TVA+AGQ GYH RTE NKKI K+ A + I P GG YG+V DY+L+KG GP KR+V LRQ + + +I +I T SK G Sbjct: 229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQI--NYISTKSKQG 335
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17 Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 1 Query: 37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 LR+V +GA++P+RVS+ V + GQ GYH RTE NK+I K+G +E +TP GG +YG+V DY+LIKG GP KR++ LR + + + L E + +I SK G Sbjct: 232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17 Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R V IG W P V ++V GQ GYH RTE NK+I K+G E ITP GG HYGV+ +Y+++KG GP KR++ LR+++ Q + + EI +I T+SK G Sbjct: 230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17 Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405 R IG W P R+ +TV AGQ G+H RTE NK+I K+G+ E I P GG +YGVV +Y+L+KG GP KR+V LR+++ + L E L ++ T SK G+ Sbjct: 228 RHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16 Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1 Query: 37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 LR V +G WHPAR+S+ V + GQ GYH RTE NK+I +G DITP GG YGVV +Y+LIKG GP KR+V +R++ ++ + A + ++ ++ SK G Sbjct: 228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG--------------TNGTDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16 Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R V +G W+P R+ + V + GQ GYH RTE NK+I K+G ++E ITP GG HYG++ DY+++KG GP KR+V +R ++ + + + ++ ++ T SK G Sbjct: 233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16 Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R + +G W P+R +TV +AGQ GYH RTE NK+I K+G AS+ + P GG YG+V DY++IKG GP KR+V LR+++ + + E ++ +I T+SK G Sbjct: 230 RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADL------------VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336 The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bpback to top |