CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRKO (50S ribosomal protein L3P OS=Pyrococcus kodakaraensis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.187e-20
Identity = 45/119 (37.82%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+      +     D  E +ITP GG PHYG+V  D+L+I+G   G  KR++ +R ++     +  +E  ++ ++   SK
Sbjct:  233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLDGNEIEITPKGGFPHYGIVRSDFLMIEGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYVSRESK 345          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEGJ (50S ribosomal protein L3P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.055e-19
Identity = 44/119 (36.97%), Postives = 71/119 (59.66%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            R +  +G WHPARV +TV +AGQ G+HHRTE NK++  +G+      +     +  E DITP GG PHYG++  D+L+I+G   G  KR++ +R ++     +  +E  ++ ++   SK
Sbjct:  233 RHIGNLGPWHPARVMWTVPQAGQMGFHHRTEFNKRLIAIGE------NGKLVLNGNEIDITPKGGFPHYGIIRSDFLMIEGSVPGSFKRIIRVRPAIKPPKKKPPVERPQITYVSRESK 345          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEON (50S ribosomal protein L3P OS=Thermococcus onnurineus (strain NA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.800e-19
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            R V  +G WHP RV +TV +AGQ G+HHRTE NK++  +G+     +  +   ++ E +ITP GG PHYG++  D+L+I+G   G  KR++ +R ++     +  +E  ++ +I   SK
Sbjct:  233 RHVGNLGPWHPTRVMWTVPQAGQMGFHHRTEFNKRLIAIGE-----NGKLKLDEKNEIEITPKGGFPHYGIIRSDFLMIQGTIPGSFKRIIRVRPAIRPPKKKPPVERPQITYISRESK 346          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METS3 (50S ribosomal protein L3P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.200e-17
Identity = 51/121 (42.15%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R V  IG W P+R  +TVA+AGQ GYH RTE NKKI K+  A +               I P GG   YG+V  DY+L+KG   GP KR+V LRQ +        + +I   +I T SK G
Sbjct:  229 RHVGSIGPWTPSRTMWTVAQAGQMGYHKRTEFNKKILKIASADEVD------------QINPDGGFVKYGLVKNDYVLVKGSLPGPSKRLVILRQPIRPNNKSEDMPQI--NYISTKSKQG 335          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METAC (50S ribosomal protein L3P OS=Methanosarcina acetivorans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.753e-17
Identity = 49/122 (40.16%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            LR+V  +GA++P+RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GG  +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  232 LRQVGTLGAFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYILIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METJA (50S ribosomal protein L3P OS=Methanocaldococcus jannaschii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 48/121 (39.67%), Postives = 66/121 (54.55%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R V  IG W P  V ++V   GQ GYH RTE NK+I K+G    E              ITP GG  HYGV+  +Y+++KG   GP KR++ LR+++  Q   + + EI   +I T+SK G
Sbjct:  230 RHVGSIGPWQPKMVMWSVPMPGQMGYHQRTEYNKRILKIGNNGDE--------------ITPKGGFLHYGVIRNNYVVLKGSVQGPAKRLIVLRRAIRPQEPLIKVPEI--TYISTTSKQG 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_META3 (50S ribosomal protein L3P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 48/122 (39.34%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R    IG W P R+ +TV  AGQ G+H RTE NK+I K+G+   E              I P GG  +YGVV  +Y+L+KG   GP KR+V LR+++     +  L E  L ++ T SK G+
Sbjct:  228 RHTGSIGPWTPKRIMWTVPMAGQVGFHQRTEYNKRILKIGENGSE--------------IVPKGGFLNYGVVKNNYVLVKGSVQGPAKRMVVLREAIRNPEDKFGLPE--LTYVSTESKQGN 333          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METTP (50S ribosomal protein L3P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.092e-16
Identity = 48/122 (39.34%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            LR V  +G WHPAR+S+ V + GQ GYH RTE NK+I  +G                  DITP GG   YGVV  +Y+LIKG   GP KR+V +R++ ++  +  A +  ++ ++   SK G
Sbjct:  228 LRHVGNLGPWHPARISWRVPQLGQTGYHQRTEFNKRIMAIG--------------TNGTDITPDGGFVGYGVVRNEYMLIKGSVPGPVKRLVRMRRA-IRPGAAFAPKAPQILYVSKESKQG 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_UNCMA (50S ribosomal protein L3P OS=Uncultured methanogenic archaeon RC-I GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R V  +G W+P R+ + V + GQ GYH RTE NK+I K+G  ++E              ITP GG  HYG++  DY+++KG   GP KR+V +R ++  +   +  +  ++ ++ T SK G
Sbjct:  233 RHVGNLGPWNPHRIRWQVPQLGQTGYHQRTEYNKRILKMGDKAEE--------------ITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAV--RPKNMPKQAPEITYLSTQSKMG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METTH (50S ribosomal protein L3P OS=Methanobacterium thermoautotrophicum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R +  +G W P+R  +TV +AGQ GYH RTE NK+I K+G AS+               + P GG   YG+V  DY++IKG   GP KR+V LR+++  + +    E  ++ +I T+SK G
Sbjct:  230 RHIGSLGPWTPSRTMWTVPQAGQMGYHRRTEYNKQILKIGDASEADL------------VNPDGGFVRYGLVRNDYVMIKGSVPGPTKRLVVLRKAI--RAAGKQEEAPQINYISTASKQG 336          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_PYRKO6.187e-2037.8250S ribosomal protein L3P OS=Pyrococcus kodakaraen... [more]
RL3_THEGJ1.055e-1936.9750S ribosomal protein L3P OS=Thermococcus gammatol... [more]
RL3_THEON1.800e-1936.9750S ribosomal protein L3P OS=Thermococcus onnurine... [more]
RL3_METS32.200e-1742.1550S ribosomal protein L3P OS=Methanobrevibacter sm... [more]
RL3_METAC3.753e-1740.1650S ribosomal protein L3P OS=Methanosarcina acetiv... [more]
RL3_METJA4.902e-1739.6750S ribosomal protein L3P OS=Methanocaldococcus ja... [more]
RL3_META34.902e-1739.3450S ribosomal protein L3P OS=Methanococcus aeolicu... [more]
RL3_METTP1.092e-1639.3450S ribosomal protein L3P OS=Methanosaeta thermoph... [more]
RL3_UNCMA1.426e-1635.5450S ribosomal protein L3P OS=Uncultured methanogen... [more]
RL3_METTH1.426e-1638.8450S ribosomal protein L3P OS=Methanobacterium ther... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
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