CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METST (50S ribosomal protein L3P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 51/122 (41.80%), Postives = 66/122 (54.10%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKD-ITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R V  IG W P R  +TVA  GQ GYH RTE NKK+ K+G             D +E D I P GG   YG V  +Y+L+KG   GP KR+V LR+ +   + ++   EI   +I T+SK G
Sbjct:  230 RHVGSIGPWTPNRTMWTVAMQGQMGYHKRTEYNKKLLKIG-------------DESEVDLINPDGGFVKYGFVKNNYILVKGSLPGPSKRLVVLRKGVRNASKQVTAPEI--SYISTTSKQG 336          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METMA (50S ribosomal protein L3P OS=Methanosarcina mazei GN=rpl3p PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.426e-16
Identity = 47/122 (38.52%), Postives = 70/122 (57.38%), Query Frame = 1
Query:   37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            LR++  +G+++P+RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GG  +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  + +I   SK G
Sbjct:  232 LRQIGTLGSFNPSRVSWRVPQMGQMGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILYISRESKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METMP (50S ribosomal protein L3P OS=Methanococcus maripaludis GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 50/122 (40.98%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR S+     +  L EI   +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEI--AYISTESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_ARCFU (50S ribosomal protein L3P OS=Archaeoglobus fulgidus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 47/136 (34.56%), Postives = 74/136 (54.41%), Query Frame = 1
Query:    1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GV  L  K  R    R+V  +G W+P  V +TV +AGQ G+H RTE NK++ K+G+  +E              ITP GG  HYGV+   Y+L+ G   GP KR++ +R ++  +  +   + + + ++ T+SK G
Sbjct:  211 GVITLDAKHARSSKHRRVGNLGPWNPHHVRWTVPQAGQMGFHQRTEYNKRLIKIGENGEE--------------ITPKGGFLHYGVIRTQYVLVTGSVPGPVKRLIRMRDAI--RPPKAHFDGVNIVYVSTTSKQG 330          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METM7 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METM6 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METM5 (50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.150e-16
Identity = 49/122 (40.16%), Postives = 62/122 (50.82%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R    IG W P RV +TV   GQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR S+     +  L E+   +I T SK G+
Sbjct:  229 RHTGSIGPWRPRRVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGSVRAAEDKFGLPEV--AYISTESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METVS (50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 48/122 (39.34%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR ++     +  L E+   +I   SK G+
Sbjct:  229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METVA (50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.078e-16
Identity = 48/122 (39.34%), Postives = 63/122 (51.64%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGH 405
            R+   IG W P RV +TV  AGQ G+H RTE NK+I KLG    E              ITP GG  +YG V   Y+++KG   GP KR+V LR ++     +  L E+   +I   SK G+
Sbjct:  229 RQTGSIGPWRPKRVMWTVPLAGQMGFHQRTEYNKRILKLGSEGAE--------------ITPKGGFLNYGAVKNGYVVVKGTVQGPAKRLVVLRGAVRPAEDKFGLPEV--TYISKESKQGN 334          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METKA (50S ribosomal protein L3P OS=Methanopyrus kandleri GN=rpl3p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.207e-15
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330
            GVT   RKT R    R +  IG   P+RV +TV  AGQ GYH RTE NK+I K+G+  +E              +TP GG  +YGVV  DY++I G   GPKKR++ +R ++
Sbjct:  221 GVTIQDRKTQRKQKGRHIGSIGPITPSRVRWTVPMAGQVGYHQRTEHNKRILKIGEDGEE--------------VTPRGGFVNYGVVRGDYIMIHGTVPGPKKRLIRVRPAV 318          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_METST1.426e-1641.8050S ribosomal protein L3P OS=Methanosphaera stadtm... [more]
RL3_METMA1.426e-1638.5250S ribosomal protein L3P OS=Methanosarcina mazei ... [more]
RL3_METMP3.177e-1640.9850S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_ARCFU3.177e-1634.5650S ribosomal protein L3P OS=Archaeoglobus fulgidu... [more]
RL3_METM74.150e-1640.1650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM64.150e-1640.1650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METM54.150e-1640.1650S ribosomal protein L3P OS=Methanococcus maripal... [more]
RL3_METVS7.078e-1639.3450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METVA7.078e-1639.3450S ribosomal protein L3P OS=Methanococcus vanniel... [more]
RL3_METKA1.207e-1542.8650S ribosomal protein L3P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
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