CB610616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15 Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 1 Query: 1 GVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 366 G+ + K R LR+V +G W PA VS+ V +AGQ GYH RT+ NK+I K+ E + P GG +YG+V +Y+LIKG GP KR++ LR+ + S + +I Sbjct: 218 GINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14 Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321 GVT LPR K +G R+ IG PA V FT R GQ G+H RTE NK++ K+G+ E ITP G PHYGVV Y+LI+G G +KR+V LR Sbjct: 220 GVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14 Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1 Query: 1 GVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330 GV RK RG +K + +G WHP V + V + GQ GY RTE NK+I K+G E ITP GG HYG+V Y+LIKG GP KR+V +R ++ Sbjct: 218 GVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14 Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTE--KDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 GV LPRK + R + +G WHP V TV +AGQ G+H RT N +I K FD + DI GG +YG+V DY+L+ G GP KR++ +R + +R A+E I++ ++ SK G Sbjct: 209 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1 Query: 1 GVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 G+ RK RG +K + +G W+P V + V + GQ GY RT+ NK+I K+G+ DITP GG HYG++ Y++IKG GP KR++ +R ++ K + I +F+ T SK G Sbjct: 218 GIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVPAI--EFVSTQSKQG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14 Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1 Query: 37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 LR++ +G + RVS+ V + GQ GYH RTE NK+I K+G +E +TP GG +YG+V DY+LIKG GP KR++ LR + + + L E + I SK G Sbjct: 232 LRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14 Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 1 Query: 1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 GV LPRK + R + +G WHP V TV +AGQ GY RT N ++ K K I GG HYG+V DY+L+ G GP KR++ +R ++ ++ +KL +I SK G Sbjct: 211 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKGEDAD------------TINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14 Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1 Query: 1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 GV LPRK + R + +G WHP V TV +AGQ G+ RT N ++ K G + I GG HYG V DY+L+ G G KR++ +R ++ +EE+KL++I SK G Sbjct: 211 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEEVD------------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14 Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1 Query: 1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321 GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G+ E ITP G PHYGV+ Y+LI+G G +KR+V LR Sbjct: 220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14 Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1 Query: 1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321 GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK+I K+G E ITP G PHYGV+ Y+L++G G +KR+V LR Sbjct: 220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313 The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bpback to top |