CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METBU (50S ribosomal protein L3P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.992e-15
Identity = 45/124 (36.29%), Postives = 65/124 (52.42%), Query Frame = 1
Query:    1 GVTRLPRKTHR--GLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEI 366
            G+  +  K  R   LR+V  +G W PA VS+ V +AGQ GYH RT+ NK+I K+     E              + P GG  +YG+V  +Y+LIKG   GP KR++ LR+    + S +   +I
Sbjct:  218 GINLMKNKHSRQGSLRQVGTLGPWTPAHVSWRVPQAGQMGYHQRTDYNKRILKMSSDVDE--------------VNPAGGFVNYGLVRGNYILIKGSVPGPSKRLIRLREPTRSKVSSIGEPQI 327          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRAE (50S ribosomal protein L3P OS=Pyrobaculum aerophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321
            GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK++ K+G+   E              ITP  G PHYGVV   Y+LI+G   G +KR+V LR
Sbjct:  220 GVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVVKGPYILIQGSVPGARKRLVVLR 313          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METMJ (50S ribosomal protein L3P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.022e-14
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330
            GV    RK  RG +K  +  +G WHP  V + V + GQ GY  RTE NK+I K+G    E              ITP GG  HYG+V   Y+LIKG   GP KR+V +R ++
Sbjct:  218 GVQVRKRKHSRGGKKRHIGNLGPWHPHHVRWQVPQMGQMGYQQRTEFNKRILKIGADGDE--------------ITPAGGFLHYGLVRGPYVLIKGSVPGPNKRLVRIRSAI 315          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PICTO (50S ribosomal protein L3P OS=Picrophilus torridus GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 49/136 (36.03%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTE--KDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+H RT  N +I K              FD  +   DI   GG  +YG+V  DY+L+ G   GP KR++ +R     + +R A+E I++ ++   SK G
Sbjct:  209 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQVGFHQRTIHNIRIIK--------------FDTKDHVDDINVKGGFLNYGIVRNDYVLLFGSVPGPAKRLIKMRDP--ARQTRPAVESIEVTYVSRESKQG 328          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METPE (50S ribosomal protein L3P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRK--VACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            G+    RK  RG +K  +  +G W+P  V + V + GQ GY  RT+ NK+I K+G+                 DITP GG  HYG++   Y++IKG   GP KR++ +R ++ K      +  I  +F+ T SK G
Sbjct:  218 GIMLRKRKHSRGGKKRHIGNLGPWNPHHVRWQVPQMGQMGYQQRTDFNKRILKIGENGT--------------DITPAGGFLHYGLLRNPYVMIKGSVPGPVKRLIRIRPAVRKGEHHARVPAI--EFVSTQSKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METBF (50S ribosomal protein L3P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 46/122 (37.70%), Postives = 65/122 (53.28%), Query Frame = 1
Query:   37 LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            LR++  +G +   RVS+ V + GQ GYH RTE NK+I K+G   +E              +TP GG  +YG+V  DY+LIKG   GP KR++ LR  +  +  +  L E  +  I   SK G
Sbjct:  232 LRQIGTLGGFGLRRVSWRVPQMGQTGYHQRTEFNKRILKIGSDGEE--------------VTPEGGFINYGLVRGDYVLIKGSVPGPSKRLIRLRDPI--RAKKADLGEPNILHISRESKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEVO (50S ribosomal protein L3P OS=Thermoplasma volcanium GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.277e-14
Identity = 46/134 (34.33%), Postives = 64/134 (47.76%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GV  LPRK  +  R +  +G WHP  V  TV +AGQ GY  RT  N ++ K  K                  I   GG  HYG+V  DY+L+ G   GP KR++ +R    ++     ++ +KL +I   SK G
Sbjct:  211 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGYQQRTISNVRVLKYSKGEDAD------------TINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPARQKVP--DIDNVKLDYISLESKQG 330          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THEAC (50S ribosomal protein L3P OS=Thermoplasma acidophilum GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 46/134 (34.33%), Postives = 65/134 (48.51%), Query Frame = 1
Query:    1 GVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GV  LPRK  +  R +  +G WHP  V  TV +AGQ G+  RT  N ++ K G   +               I   GG  HYG V  DY+L+ G   G  KR++ +R    ++     +EE+KL++I   SK G
Sbjct:  211 GVKLLPRKNRKHRRMIGTLGPWHPDWVRNTVPQAGQMGFQQRTISNVRVIKYGNKEEVD------------SINVRGGFLHYGFVKNDYVLLFGSIPGASKRLIKMRDPARQKVP--DIEEVKLEYISLESKQG 330          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRAR (50S ribosomal protein L3P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.974e-14
Identity = 47/109 (43.12%), Postives = 60/109 (55.05%), Query Frame = 1
Query:    1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321
            GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G+   E              ITP  G PHYGV+   Y+LI+G   G +KR+V LR
Sbjct:  220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRLLKIGENGAE--------------ITPKSGFPHYGVIKGPYILIQGSLPGARKRLVVLR 313          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRCJ (50S ribosomal protein L3P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.073e-14
Identity = 47/109 (43.12%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321
            GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK+I K+G    E              ITP  G PHYGV+   Y+L++G   G +KR+V LR
Sbjct:  220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRILKIGDNGAE--------------ITPKSGFPHYGVIKGPYILLQGSVPGARKRLVVLR 313          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_METBU5.992e-1536.2950S ribosomal protein L3P OS=Methanococcoides burt... [more]
RL3_PYRAE1.022e-1444.9550S ribosomal protein L3P OS=Pyrobaculum aerophilu... [more]
RL3_METMJ1.022e-1441.0750S ribosomal protein L3P OS=Methanoculleus marisn... [more]
RL3_PICTO1.335e-1436.0350S ribosomal protein L3P OS=Picrophilus torridus ... [more]
RL3_METPE1.743e-1434.5650S ribosomal protein L3P OS=Methanosphaerula palu... [more]
RL3_METBF1.743e-1437.7050S ribosomal protein L3P OS=Methanosarcina barker... [more]
RL3_THEVO2.277e-1434.3350S ribosomal protein L3P OS=Thermoplasma volcaniu... [more]
RL3_THEAC2.974e-1434.3350S ribosomal protein L3P OS=Thermoplasma acidophi... [more]
RL3_PYRAR2.974e-1443.1250S ribosomal protein L3P OS=Pyrobaculum arsenatic... [more]
RL3_PYRCJ5.073e-1443.1250S ribosomal protein L3P OS=Pyrobaculum calidifon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
back to top