CB610616

Overview
NameCB610616
Unique NameCB610616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14
Identity = 51/136 (37.50%), Postives = 66/136 (48.53%), Query Frame = 1
Query:    1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GV    RK  RG   R V  +G W P  V + V   GQ GYH RTE NK++ K+G+   E              ITP GG  +YG V   Y+LIKG   GP KR+V +R ++  +     + E  + FI   SK G
Sbjct:  218 GVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query:    1 GVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            GVT   RK   G   R V  +G W+P  V + V ++GQ GY  RTE NK+I K+G+   E              ITP GG  +YGV+   Y++IKG   GP KR++ +R ++  +     +    ++F+   SK G
Sbjct:  218 GVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13
Identity = 49/109 (44.95%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321
            GVT LPR  K  +G R+   IG   PA V FT  R GQ G+H RTE NK+I K+G    E              ITP  G  HYGVV   Y+LI+G   G +KR+V LR
Sbjct:  224 GVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 47/109 (43.12%), Postives = 58/109 (53.21%), Query Frame = 1
Query:    1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321
            GVT LPR  K  +G R+   IG   PA + FT  R GQ G+H RTE NK++ K+G    E              ITP  G  HYGV+   Y+LI+G   G KKR+V LR
Sbjct:  220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  LG                + D++P GG  +YG V+  Y L+KG   GP KR+V  R ++
Sbjct:  234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +                TP GG P+YG V+  Y L+KG   GP++R+V  R ++    S     E+  +++ T+S  G
Sbjct:  232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13
Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +    +                TP GG P+YG V+  Y L+KG   GP++R+V  R ++    S     E+  +++ T+S  G
Sbjct:  232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
Query:    1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 402
            G+T   RK  R    R +  +G W P  V + V   GQ G+  RTE NK+I K+G+ + E              I P GG  HYG+V  +Y+LIKG   GP KR+V +R +     +R+  ++I+   ++++   SK G
Sbjct:  214 GITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5)

HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11
Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1
Query:   40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330
            R++  +G W+P+RV  TV + GQ GYH RTE+NK++  +G+  +                T  GG  +YG V+  Y L+KG   GP KR+V  R ++
Sbjct:  235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316          
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11
Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1
Query:    4 VTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396
            V R   K+ +G+RKV  IG+  P R+  TV   GQ GYH RTE NK I K+G                 + +   GG   YG V    +L+KG   GP+KR++ LR+++     +  +E I  ++I  S K
Sbjct:  209 VHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGI--EYISLSPK 320          
The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
RL3_METHJ6.625e-1437.5050S ribosomal protein L3P OS=Methanospirillum hung... [more]
RL3_METB61.130e-1334.5650S ribosomal protein L3P OS=Methanoregula boonei ... [more]
RL3_PYRIL1.476e-1344.9550S ribosomal protein L3P OS=Pyrobaculum islandicu... [more]
RL3_THENV2.518e-1343.1250S ribosomal protein L3P OS=Thermoproteus neutrop... [more]
RL3_NATPD4.294e-1338.1450S ribosomal protein L3P OS=Natronomonas pharaoni... [more]
RL3_HALSA4.294e-1333.0650S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_HALS34.294e-1333.0650S ribosomal protein L3P OS=Halobacterium salinar... [more]
RL3_METLZ9.567e-1333.8150S ribosomal protein L3P OS=Methanocorpusculum la... [more]
RL3_HALMA1.804e-1136.0850S ribosomal protein L3P OS=Haloarcula marismortu... [more]
RL3_NANEQ3.078e-1134.3550S ribosomal protein L3P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D03 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bp
GGGGTTACTCGTCTCCCTCGTAAGACTCACCGTGGTCTACGCAAGGTTGC
TTGTATTGGTGCCTGGCATCCGGCTAGGGTCTCCTTTACTGTTGCTAGAG
CTGGGCAGAACGGCTACCACCACCGTACAGAGATGAACAAGAAAATTTAC
AAGCTTGGGAAGGCCAGCCAGGAGTCTCATTCTGCCATGACTGAATTTGA
CAGGACGGAGAAGGATATCACCCCAATGGGAGGCTCCCCCCACTATGGTG
TAGTCAATGAAGATTACCTGCTGATCAAGGGCTGCTGTGTTGGACCTAAG
AAGCGTGTTGTGACCTTGAGGCAGTCCCTACTGAAGCAGACGTCTAGGCT
TGCATTGGAGGAGATTAAGCTCAAGTTCATTGACACATCCTCCAAGTTCG
GCCATGGTCGGTTCCAGAGAACTCAGGAGAAGGCCAAGTACTATGGAAGG
CTCAAGGCTTGATTTTGGCCAAGTTGAAAAAGAGATTGCCTTTGGTTTCA
GGGTAGTTTTGAACATCTAAGATTGTTGGTCATTCTAGTCTCTATTTTGA
ATTAATATGGCTATGGCTACACTGGCAGTTCTTTGAAACTTCATTTGTGC
ATGGTTTCTTTTTTGCGCGTTAATACAT
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