CB610616
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METHJ (50S ribosomal protein L3P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl3p PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.625e-14 Identity = 51/136 (37.50%), Postives = 66/136 (48.53%), Query Frame = 1 Query: 1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 GV RK RG R V +G W P V + V GQ GYH RTE NK++ K+G+ E ITP GG +YG V Y+LIKG GP KR+V +R ++ + + E + FI SK G Sbjct: 218 GVHLRKRKHSRGKKERHVGTLGPWTPHHVRWQVPMMGQMGYHQRTEFNKRLLKIGEDGAE--------------ITPEGGFINYGEVRARYVLIKGSVPGPSKRLVRIRHAM--RLGEHKIREPTIGFISLESKQG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METB6 (50S ribosomal protein L3P OS=Methanoregula boonei (strain 6A8) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.130e-13 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1 Query: 1 GVTRLPRKTHRG--LRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 GVT RK G R V +G W+P V + V ++GQ GY RTE NK+I K+G+ E ITP GG +YGV+ Y++IKG GP KR++ +R ++ + + ++F+ SK G Sbjct: 218 GVTLRKRKHSVGGKERHVGTLGPWNPHHVRWEVPQSGQMGYQQRTEFNKRILKIGENGAE--------------ITPAGGFLNYGVIRNAYVVIKGSIPGPAKRLIRIRPAI--RQGEHVVRSPAIQFVSVQSKQG 337
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_PYRIL (50S ribosomal protein L3P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl3p PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.476e-13 Identity = 49/109 (44.95%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321 GVT LPR K +G R+ IG PA V FT R GQ G+H RTE NK+I K+G E ITP G HYGVV Y+LI+G G +KR+V LR Sbjct: 224 GVTILPRWHKHRKGHRRTGTIGPQAPA-VMFTQPRPGQMGFHQRTEYNKRIIKIGDNGAE--------------ITPKSGFLHYGVVKGPYILIQGTVPGARKRLVVLR 317
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_THENV (50S ribosomal protein L3P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl3p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13 Identity = 47/109 (43.12%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 1 GVTRLPR--KTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLR 321 GVT LPR K +G R+ IG PA + FT R GQ G+H RTE NK++ K+G E ITP G HYGV+ Y+LI+G G KKR+V LR Sbjct: 220 GVTILPRWHKHRKGHRRTGTIGPQAPA-LMFTQPRPGQMGFHQRTEYNKRVVKIGDNGAE--------------ITPKSGFLHYGVIRGPYILIQGTVPGAKKRLVVLR 313
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_NATPD (50S ribosomal protein L3P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13 Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330 R++ +G W+P+RV TV + GQ GYH RTE+NK++ LG + D++P GG +YG V+ Y L+KG GP KR+V R ++ Sbjct: 234 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDLG----------------DDDVSPDGGFVNYGEVDGPYALVKGSVPGPDKRLVRFRPAV 314
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALSA (50S ribosomal protein L3P OS=Halobacterium salinarium GN=rpl3p PE=3 SV=3) HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13 Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GG P+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALS3 (50S ribosomal protein L3P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl3p PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 4.294e-13 Identity = 40/121 (33.06%), Postives = 64/121 (52.89%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFG 402 R++ +G W+P+RV TV + GQ GYH RTE+NK++ + + TP GG P+YG V+ Y L+KG GP++R+V R ++ S E+ +++ T+S G Sbjct: 232 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDINDGDEP---------------TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVRPNESPRLDPEV--RYVSTASNQG 335
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_METLZ (50S ribosomal protein L3P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl3p PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 9.567e-13 Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1 Query: 1 GVTRLPRKTHRGL--RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK---LKFIDTSSKFG 402 G+T RK R R + +G W P V + V GQ G+ RTE NK+I K+G+ + E I P GG HYG+V +Y+LIKG GP KR+V +R + +R+ ++I+ ++++ SK G Sbjct: 214 GITLRKRKHARTKKERHIGTLGPWTPHHVRWQVPMPGQMGFQQRTEFNKRIIKIGENADE--------------INPAGGFLHYGLVRNNYVLIKGSIPGPAKRLVRIRSA-----TRMGEQKIQAPVVEYVSLQSKQG 333
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_HALMA (50S ribosomal protein L3P OS=Haloarcula marismortui GN=rpl3p PE=1 SV=5) HSP 1 Score: 69.3218 bits (168), Expect = 1.804e-11 Identity = 35/97 (36.08%), Postives = 53/97 (54.64%), Query Frame = 1 Query: 40 RKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSL 330 R++ +G W+P+RV TV + GQ GYH RTE+NK++ +G+ + T GG +YG V+ Y L+KG GP KR+V R ++ Sbjct: 235 RRIGNLGPWNPSRVRSTVPQQGQTGYHQRTELNKRLIDIGEGDEP---------------TVDGGFVNYGEVDGPYTLVKGSVPGPDKRLVRFRPAV 316
BLAST of CB610616 vs. ExPASy Swiss-Prot
Match: RL3_NANEQ (50S ribosomal protein L3P OS=Nanoarchaeum equitans GN=rpl3p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.078e-11 Identity = 45/131 (34.35%), Postives = 65/131 (49.62%), Query Frame = 1 Query: 4 VTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKIYKLGKASQESHSAMTEFDRTEKDITPMGGSPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSK 396 V R K+ +G+RKV IG+ P R+ TV GQ GYH RTE NK I K+G + + GG YG V +L+KG GP+KR++ LR+++ + +E I ++I S K Sbjct: 209 VHRRQHKSEKGVRKVGAIGSRGPGRIFPTVPMPGQMGYHRRTEYNKLIIKIG-----------------EPLNVEGGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGI--EYISLSPK 320 The following BLAST results are available for this feature:
BLAST of CB610616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 72
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Sequences
The
following sequences are available for this feature:
EST sequence >CB610616 ID=CB610616; Name=CB610616; organism=Citrus sinensis; type=EST; length=628bpback to top |