CB610622

Overview
NameCB610622
Unique NameCB610622
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2478 contig Csv1_Contig2478:45..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: RL7A_SULTO (50S ribosomal protein L7Ae OS=Sulfolobus tokodaii GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  153 ILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKL 467
            +LD V++A    ++KKG NE TK + RG ++ +V+A D              E+K +PYV+VPSK+ALG ACG+   V A S    +  + K  + ++   +E+L
Sbjct:   19 VLDAVRKAKESGKIKKGTNETTKAVERGQAKLVVIATDVQPEEIVAHLPLLCEEKKIPYVYVPSKKALGEACGL--QVAAASAAIIDPGEAKDLLDEIVKRVEEL 121          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_BOVIN (H/ACA ribonucleoprotein complex subunit 2 OS=Bos taurus GN=NHP2 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.341e-12
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  105 VNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            +NP A PLA   L   +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFINKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_HUMAN (H/ACA ribonucleoprotein complex subunit 2 OS=Homo sapiens GN=NHP2 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 37/105 (35.24%), Postives = 53/105 (50.48%), Query Frame = 3
Query:  108 NPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            NP A PLA   L   +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHEEYQ 136          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_MOUSE (H/ACA ribonucleoprotein complex subunit 2 OS=Mus musculus GN=Nhp2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 37/106 (34.91%), Postives = 54/106 (50.94%), Query Frame = 3
Query:  105 VNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            +NP A PLA   L   +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  +E  Q
Sbjct:   31 LNPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVLCEDQNLPYVYIPSKTDLGAATGSKRPTCVIMVKPHEEYQ 136          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_PONAB (H/ACA ribonucleoprotein complex subunit 2 OS=Pongo abelii GN=NHP2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 36/105 (34.29%), Postives = 53/105 (50.48%), Query Frame = 3
Query:  108 NPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            NP A PLA   L   +   +++A   KQ+++G  E  K +N+G    +V+A DT             ED+N+PYV++PSK  LG A G  RP     V  ++  Q
Sbjct:   32 NPIAQPLASRRLTRKLYKCIKKAVKQKQIRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSKRPTCVIMVKPHDEYQ 136          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_YEAST (H/ACA ribonucleoprotein complex subunit 2 OS=Saccharomyces cerevisiae GN=NHP2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.588e-11
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 3
Query:  102 AVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRP--VIACSVTSNEASQLKTQIQQLKDAIEKLL 470
            AV P A PLA   L   +L  V++A+  K +K+G  E  K L +G    +V+A D              ED +VPY+F+PSKQ LG A    RP  V+     SN+    K + ++ K++  +++
Sbjct:   26 AVLPFAKPLASKKLNKKVLKTVKKASKAKNVKRGVKEVVKALRKGEKGLVVIAGDISPADVISHIPVLCEDHSVPYIFIPSKQDLGAAGATKRPTSVVFIVPGSNKKKDGKNKEEEYKESFNEVV 150          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_XENLA (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus laevis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 36/106 (33.96%), Postives = 51/106 (48.11%), Query Frame = 3
Query:  105 VNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            +NP A PLA   L   +   V++A   K +++G  E  K +N+G    +VMA DT             ED+ +PY +VPSK  LG A G  RP     +  +E  Q
Sbjct:   27 LNPVAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQ 132          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_DANRE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Danio rerio GN=nhp2 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 34/103 (33.01%), Postives = 53/103 (51.46%), Query Frame = 3
Query:  105 VNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNE 413
            +NP A PLA   L   +   V++AA  KQ+++G  E  K +N+G +  +V A DT             ED+++PY +VPSK  LG + G  RP     +  ++
Sbjct:   28 INPIANPLASRKLSKKLYKCVKKAAKVKQIRRGVKEVQKFINKGETGIVVFAGDTLPIDVYCHLPIMCEDRSLPYAYVPSKVDLGSSAGSKRPTCVIMIKPHD 130          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_ARATH (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Arabidopsis thaliana GN=At5g08180 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 45/142 (31.69%), Postives = 65/142 (45.77%), Query Frame = 3
Query:   69 SVPATTKMSGEAVNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSV---------TSNEASQLKTQIQQLKDAIEKL 467
            S+    K     + P A PLA   L      L+Q+AA  K LK+G  E  K++ RG     V+A +              E+  VPYV+VPSK+ L +A    RP     V         T+ E ++LKT  +Q+ D I++L
Sbjct:   10 SIQKEKKKYAITLAPIAKPLAGKKLQKRTFKLIQKAAGKKCLKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQAGATKRPTCCVLVMLKPAKGDLTAEELAKLKTDYEQVSDDIKEL 151          
BLAST of CB610622 vs. ExPASy Swiss-Prot
Match: NHP2_XENTR (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Xenopus tropicalis GN=nhp2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 36/106 (33.96%), Postives = 51/106 (48.11%), Query Frame = 3
Query:  105 VNPKAYPLADSNLIITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXXAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 422
            +NP A PLA   L   +   V++A   K +++G  E  K +N+G    +VMA DT             ED+ +PY +VPSK  LG A G  RP     +  +E  Q
Sbjct:   27 LNPIAKPLAGRKLTKKLYKCVKKAIKQKNIRRGVKEVQKFINKGEKGIVVMAGDTLPIEVYCHIPVMCEDRGIPYSYVPSKSDLGAAAGSKRPTCVILIKPHEDYQ 132          
The following BLAST results are available for this feature:
BLAST of CB610622 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL7A_SULTO2.341e-1235.2450S ribosomal protein L7Ae OS=Sulfolobus tokodaii ... [more]
NHP2_BOVIN2.341e-1234.91H/ACA ribonucleoprotein complex subunit 2 OS=Bos t... [more]
NHP2_HUMAN3.993e-1235.24H/ACA ribonucleoprotein complex subunit 2 OS=Homo ... [more]
NHP2_MOUSE5.216e-1234.91H/ACA ribonucleoprotein complex subunit 2 OS=Mus m... [more]
NHP2_PONAB8.897e-1234.29H/ACA ribonucleoprotein complex subunit 2 OS=Pongo... [more]
NHP2_YEAST2.588e-1132.80H/ACA ribonucleoprotein complex subunit 2 OS=Sacch... [more]
NHP2_XENLA5.767e-1133.96H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_DANRE5.767e-1133.01H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_ARATH5.767e-1131.69H/ACA ribonucleoprotein complex subunit 2-like pro... [more]
NHP2_XENTR7.531e-1133.96H/ACA ribonucleoprotein complex subunit 2-like pro... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_D10 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_D10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610622 ID=CB610622; Name=CB610622; organism=Citrus sinensis; type=EST; length=662bp
GGGGCTCTTCTTTCGCTTAAACCCTGGGACCTTTGTACGCTTCATTAGCT
GCCGCAAAAACCCTAGCCTCCGTCCCCGCCACCACGAAAATGTCAGGAGA
AGCAGTGAACCCTAAAGCTTACCCGCTAGCAGATTCTAATCTCATAATCA
CGATACTGGATCTCGTTCAGCAAGCTGCCAATTACAAGCAGCTCAAAAAG
GGCGCCAATGAAGCTACTAAGACTCTTAACAGAGGTATCTCCGAGTTTAT
TGTGATGGCTGCTGATACCGAGCCTCTGGAGATTCTTCTTCATCTTCCAC
TGCTTGCAGAGGACAAGAATGTTCCCTATGTTTTTGTCCCTTCAAAGCAG
GCTCTTGGCAGGGCATGTGGGGTCACAAGACCTGTCATTGCTTGCTCTGT
GACCTCAAATGAGGCGAGTCAGTTGAAGACTCAAATTCAACAGCTGAAGG
ATGCCATTGAGAAGCTCTTGATATGAATATAATGGGATTCATATTCGGTG
TGATGGGCCTCTTTGATGGTGGTTAGAGGCTTTGACTGATGGTGTAGTTG
TGCTGCTTGGAAATCTTCTATTATTAATCTTTGTATTTTTGTCTTTTATG
TTTTCTTGTCATGCGATCTGGGAAAGCTTTTGGAATCATATTTACCAGAA
CCTGCAATGAAT
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