CB610628

Overview
NameCB610628
Unique NameCB610628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_GEOTN (10 kDa chaperonin OS=Geobacillus thermodenitrificans (strain NG80-2) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +KPLGDR+++++   EEKT  GI LP  A+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGTGRVLDNGQRVAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_GEOKA (10 kDa chaperonin OS=Geobacillus kaustophilus GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +KPLGDR+++++   EEKT  GI LP  A+ KPQ G VVAVG G+ +    ++   V+ G ++I+SKYAGTE++++G  +LI+RE D++ ++
Sbjct:    1 MKPLGDRIVIEVVETEEKTASGIVLPDTAKEKPQEGRVVAVGAGRVLDNGQRIAPEVEVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CYAP4 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 44/94 (46.81%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GE+VAVG GK     ++ +  VK G +V+YSKYAGT+++     ++++ E D++ I+
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQVGEIVAVGPGKRNDDGSRQEPEVKIGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAIV 102          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_BACP2 (10 kDa chaperonin OS=Bacillus pumilus (strain SAFR-032) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 40/92 (43.48%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + V  G ++I+SKYAGTE+++ G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRVIIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVNTGDRIIFSKYAGTEVKYEGKEYLILRESDILAVI 93          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ALKOO (10 kDa chaperonin OS=Alkaliphilus oremlandii (strain OhILAs) GN=groS PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.910e-18
Identity = 42/93 (45.16%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +IKPLGDRV++K    EE T  GI LP +A+ +PQ  EV+AVG G  +   ++ + VK G +VI+SKYAGTE++F+G  + I+++ D++ ++E
Sbjct:    2 NIKPLGDRVVIKRVEAEETTKSGIVLPGSAKEQPQLAEVMAVGPGGVIEGKEVVMEVKVGDKVIFSKYAGTEVKFDGVEYTILKQSDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_TREDE (10 kDa chaperonin OS=Treponema denticola GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 47/92 (51.09%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +KPLGDRVLVK   VE KT GGI +P  AQ K Q G VVAVG+     K K+ +SV  G +VI+ KYAGT+++ +G +HLI++ +D+V ++E
Sbjct:    3 VKPLGDRVLVKPDAVETKTAGGIIIPDTAQEKTQRGVVVAVGD----DKEKIKVSV--GQKVIHDKYAGTQIQIDGVDHLILKSNDLVAVVE 88          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_SYNY3 (10 kDa chaperonin OS=Synechocystis sp. (strain PCC 6803) GN=groS PE=1 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 557
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GEVV VG GK         + VK G +V+YSKYAGT+++  G +++++ E D++
Sbjct:    9 STVKPLGDRVFVKVSPAEEKTAGGILLPDNAKEKPQIGEVVQVGPGKRNDDGTYSPVEVKVGDKVLYSKYAGTDIKLGGDDYVLLTEKDIL 99          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LISW6 (10 kDa chaperonin OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 42/91 (46.15%), Postives = 65/91 (71.43%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ+G++VAVG G+ +    K  + V  G  VI++KY+GTE+ + G ++LI+RE D++ I
Sbjct:    2 LKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGSGRVLENGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CHLT3 (10 kDa chaperonin OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 43/93 (46.24%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            ++KPL DRV+VK    EEKT GG+++P + + KPQ GEVVAVG GK       + + V+ G +V+Y KY+GTE+  +G ++LI+RE D+  I+
Sbjct:    2 NLKPLADRVIVKPSPAEEKTKGGLYIPDSGKEKPQHGEVVAVGPGKAADNGTVVAMEVQVGQKVLYGKYSGTEVTVDGEDYLIMRESDIFAII 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ANOFW (10 kDa chaperonin OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 41/92 (44.57%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +KPLGDR+++++   EEKT  GI LP  A+ KPQ G+VVAVG G+ +    ++   V  G ++I+SKYAGTE++++G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRIVIELIQTEEKTASGIVLPDTAKEKPQEGKVVAVGSGRVLDNGERVAPEVSVGDRIIFSKYAGTEVKYDGKEYLILRESDILAVI 93          
The following BLAST results are available for this feature:
BLAST of CB610628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_GEOTN5.910e-1844.5710 kDa chaperonin OS=Geobacillus thermodenitrifica... [more]
CH10_GEOKA5.910e-1844.5710 kDa chaperonin OS=Geobacillus kaustophilus GN=g... [more]
CH10_CYAP45.910e-1846.8110 kDa chaperonin OS=Cyanothece sp. (strain PCC 74... [more]
CH10_BACP25.910e-1843.4810 kDa chaperonin OS=Bacillus pumilus (strain SAFR... [more]
CH10_ALKOO5.910e-1845.1610 kDa chaperonin OS=Alkaliphilus oremlandii (stra... [more]
CH10_TREDE7.719e-1851.0910 kDa chaperonin OS=Treponema denticola GN=groS P... [more]
CH10_SYNY37.719e-1848.3510 kDa chaperonin OS=Synechocystis sp. (strain PCC... [more]
CH10_LISW67.719e-1846.1510 kDa chaperonin OS=Listeria welshimeri serovar 6... [more]
CH10_CHLT37.719e-1846.2410 kDa chaperonin OS=Chloroherpeton thalassium (st... [more]
CH10_ANOFW7.719e-1844.5710 kDa chaperonin OS=Anoxybacillus flavithermus (s... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610628 ID=CB610628; Name=CB610628; organism=Citrus sinensis; type=EST; length=637bp
GGGGCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTC
GCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTG
CATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGG
TTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTC
AAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTT
GGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAAC
CTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACT
GATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGG
TGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGG
ACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGG
ACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGA
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