CB610628

Overview
NameCB610628
Unique NameCB610628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ALKMQ (10 kDa chaperonin OS=Alkaliphilus metalliredigens (strain QYMF) GN=groS PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.719e-18
Identity = 42/93 (45.16%), Postives = 67/93 (72.04%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +IKPLGD+V++K    E+KT  GI LP +A+ +PQ  EVVAVG G  V   ++ + +K G +VI+SKYAGTE++ +G  + I+R++D++ ++E
Sbjct:    2 NIKPLGDKVVIKKVEAEDKTKSGIVLPGSAKEQPQMAEVVAVGPGGVVEGKEIIMELKVGDKVIFSKYAGTEVKLDGEEYTILRQNDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_NOSP7 (10 kDa chaperonin OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 40/94 (42.55%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +++KPL DRV VK+   EEKT GG++LP  A+ KPQ GEVVA+G GK     ++ ++ +K G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLSDRVFVKVNASEEKTAGGLYLPDTAKEKPQVGEVVALGPGKRNEDGSRQELEIKVGDKVLYSKYAGTDIKLGTEEYVLLSEKDILAVV 102          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LEUCK (10 kDa chaperonin OS=Leuconostoc citreum (strain KM20) GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +KPLGDRV++++    E+T GGI L + A+ KP  G+VVAVG G  +   +K D++VK G QV++ KYAG E+ F GA++L + E D+V I+E
Sbjct:    2 LKPLGDRVIIEVTEAAEQTVGGIVLANNAKDKPVTGKVVAVGSGYVLNDGSKQDLTVKSGDQVLFDKYAGQEVSFEGADYLALHEKDIVAIVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CHLTE (10 kDa chaperonin OS=Chlorobium tepidum GN=groS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.008e-17
Identity = 44/93 (47.31%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            ++KPL DRV+VK    EEKT GG+++P   + KP  GEVVAVG GK     + + + VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGPGKVSDAGQVVAMQVKAGDKVLYGKYSGTEVHVEGEDYLIMRESDIFAIL 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACZE (10 kDa chaperonin OS=Lactobacillus zeae GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACCB (10 kDa chaperonin OS=Lactobacillus casei (strain BL23) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACC3 (10 kDa chaperonin OS=Lactobacillus casei (strain ATCC 334) GN=groS PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.317e-17
Identity = 44/91 (48.35%), Postives = 66/91 (72.53%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            +KPLGDRV+V++   EE+T GGI L + A+ KPQ G+VVAVGEG    + K L ++VK G  V+Y KYAG+E+++ G ++L++ E D++ I
Sbjct:    2 LKPLGDRVIVEVVEEEEQTVGGIVLANNAKQKPQTGKVVAVGEGALTPEGKRLPMAVKVGDTVLYDKYAGSEVKYEGQDYLVLHEKDIMAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_SPHWW (10 kDa chaperonin OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            S +PL DRVLV+    EEKT GGI +P +A+ KPQ GEVVAVG G      K+  + VK G ++++ K++GTE++ NG + LI++E D++GI+
Sbjct:    2 SFRPLHDRVLVRRVEAEEKTAGGIIIPDSAKEKPQEGEVVAVGGGSKAEDGKVTPLDVKAGDKILFGKWSGTEVKINGEDLLIMKESDILGIV 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACS1 (10 kDa chaperonin OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 38/93 (40.86%), Postives = 68/93 (73.12%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +KPLGDRV++K++  EE++ GGI + S A+ KP  GEV+AVG G+ +    +++  VK G  V++ KYAG+E+++ G  +L++RE+D++ +++
Sbjct:    2 LKPLGDRVVLKVQKEEEQSIGGIVIASNAKEKPTTGEVIAVGNGRILDNGQRVEPEVKVGQSVVFDKYAGSEVKYEGEEYLVIRENDIIAVID 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_DESOH (10 kDa chaperonin OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=groS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = 3
Query:  297 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +PL DR+LVK    E KT GGI +P  A+ KP  G+V+AVG G+     KL  + VK G +V++ KY GTE++ +G  +LI+REDD++GILE
Sbjct:    4 RPLHDRILVKRVEEETKTKGGIIIPDTAKEKPIEGKVMAVGNGRLGEDGKLIPLEVKKGDRVLFGKYGGTEVKMDGQEYLIMREDDILGILE 95          
The following BLAST results are available for this feature:
BLAST of CB610628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_ALKMQ7.719e-1845.1610 kDa chaperonin OS=Alkaliphilus metalliredigens ... [more]
CH10_NOSP71.008e-1742.5510 kDa chaperonin OS=Nostoc punctiforme (strain AT... [more]
CH10_LEUCK1.008e-1747.3110 kDa chaperonin OS=Leuconostoc citreum (strain K... [more]
CH10_CHLTE1.008e-1747.3110 kDa chaperonin OS=Chlorobium tepidum GN=groS PE... [more]
CH10_LACZE1.317e-1748.3510 kDa chaperonin OS=Lactobacillus zeae GN=groS PE... [more]
CH10_LACCB1.317e-1748.3510 kDa chaperonin OS=Lactobacillus casei (strain B... [more]
CH10_LACC31.317e-1748.3510 kDa chaperonin OS=Lactobacillus casei (strain A... [more]
CH10_SPHWW1.720e-1747.3110 kDa chaperonin OS=Sphingomonas wittichii (strai... [more]
CH10_LACS11.720e-1740.8610 kDa chaperonin OS=Lactobacillus salivarius subs... [more]
CH10_DESOH1.720e-1748.9110 kDa chaperonin OS=Desulfococcus oleovorans (str... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610628 ID=CB610628; Name=CB610628; organism=Citrus sinensis; type=EST; length=637bp
GGGGCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTC
GCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTG
CATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGG
TTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTC
AAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTT
GGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAAC
CTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACT
GATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGG
TGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGG
ACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGG
ACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGA
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