CB610628

Overview
NameCB610628
Unique NameCB610628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH102_RHILO (10 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.720e-17
Identity = 42/94 (44.68%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            + +PL DR+LV+    EEKT GGI +P  A+ KPQ GEV+A+G G      KL  + VK G ++++ K++GTE++ NG + LI++E DV+G++E
Sbjct:    2 TFRPLHDRILVRRIEAEEKTAGGIIIPDTAKEKPQEGEVIAIGPGARDESGKLTPLDVKAGDRILFGKWSGTEIKLNGEDLLIMKESDVMGVIE 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_THET8 (10 kDa chaperonin OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=groS PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++I+ E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_THET2 (10 kDa chaperonin OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=groS PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 44/95 (46.32%), Postives = 65/95 (68.42%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            T IKPLGDRV+VK    E KT GGI LP  A+ KPQ G+V+AVG G+ +    ++ + VK G  V+++KY GTE+E +G  ++I+ E D++ +L+
Sbjct:    7 TVIKPLGDRVVVKRIEEEPKTKGGIVLPDTAKEKPQKGKVIAVGTGRVLENGQRVPLEVKEGDIVVFAKYGGTEIEIDGEEYVILSERDLLAVLQ 101          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_RUBXD (10 kDa chaperonin OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 43/91 (47.25%), Postives = 62/91 (68.13%), Query Frame = 3
Query:  297 KPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            KPLG+R LVK+   EEKT  GI LP  A+ KPQ  EV+AVG+ +       DI VK G  V+++KY+GTE+  NG +++I+  DD++G++E
Sbjct:    4 KPLGERALVKLVEREEKTASGIVLPDTAKEKPQTAEVIAVGDSE-------DIKVKEGDVVVFAKYSGTEISLNGDDYMILDADDILGVVE 87          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LEPIN (10 kDa chaperonin OS=Leptospira interrogans GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            SIKPLGDRVLV+ +   E+  G IF+P  A+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LEPIC (10 kDa chaperonin OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=groS PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            SIKPLGDRVLV+ +   E+  G IF+P  A+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLIPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CORDI (10 kDa chaperonin OS=Corynebacterium diphtheriae GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +IKPL DRVLV+I   E  T  G+ +P +A+ KPQ G VVA G G+  G  ++ + +K G  V++SKY GTEL++NG  +L++   DV+ I+E
Sbjct:    5 NIKPLEDRVLVQISEAETTTASGLVIPDSAKEKPQEGVVVAAGPGRFDGDDRVPMDIKEGDTVVFSKYGGTELKYNGEEYLLLNARDVLAIIE 97          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_COPPD (10 kDa chaperonin OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=groS PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            IKPLGDRVL+K    EEKT  GI +P  A+ KPQ G+V+AVG G+T+    ++ + V+ G  V++SKYAGTE++ +G  +LIV E D++ ++
Sbjct:    3 IKPLGDRVLLKPMEEEEKTKSGIVIPDTAKEKPQKGKVLAVGTGRTLDNGTRVPLEVQVGDIVVFSKYAGTEVKVDGEEYLIVSERDILAVV 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LEPBL (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=groS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            SIKPLGDRVLV+ +   E+  G IF+P  A+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LEPBJ (10 kDa chaperonin OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=groS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.933e-17
Identity = 42/93 (45.16%), Postives = 62/93 (66.67%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            SIKPLGDRVLV+ +   E+  G IF+P  A+ KPQ G+VV +G GK      + + VK G  V+Y KY+GTE++  G  +LI+RE D++ +++
Sbjct:    3 SIKPLGDRVLVEPRQEAEEKIGSIFVPDTAKEKPQEGKVVEIGSGKYEDGKLVPLEVKVGDTVLYGKYSGTEIKSEGKEYLIIRESDILAVVK 95          
The following BLAST results are available for this feature:
BLAST of CB610628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH102_RHILO1.720e-1744.6810 kDa chaperonin 2 OS=Rhizobium loti GN=groS2 PE=... [more]
CH10_THET82.246e-1746.3210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_THET22.246e-1746.3210 kDa chaperonin OS=Thermus thermophilus (strain ... [more]
CH10_RUBXD2.246e-1747.2510 kDa chaperonin OS=Rubrobacter xylanophilus (str... [more]
CH10_LEPIN2.246e-1745.1610 kDa chaperonin OS=Leptospira interrogans GN=gro... [more]
CH10_LEPIC2.246e-1745.1610 kDa chaperonin OS=Leptospira interrogans serogr... [more]
CH10_CORDI2.246e-1745.1610 kDa chaperonin OS=Corynebacterium diphtheriae G... [more]
CH10_COPPD2.246e-1747.8310 kDa chaperonin OS=Coprothermobacter proteolytic... [more]
CH10_LEPBL2.933e-1745.1610 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]
CH10_LEPBJ2.933e-1745.1610 kDa chaperonin OS=Leptospira borgpetersenii ser... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610628 ID=CB610628; Name=CB610628; organism=Citrus sinensis; type=EST; length=637bp
GGGGCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTC
GCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTG
CATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGG
TTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTC
AAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTT
GGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAAC
CTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACT
GATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGG
TGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGG
ACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGG
ACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGA
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