CB610628

Overview
NameCB610628
Unique NameCB610628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_PARD8 (10 kDa chaperonin OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +I+PL DRVL+K    EEKT GGI +P +A+ KP  GE+VAVG     G    ++ VK G  V+Y KYAGTE+E +G  +LI+R+ DV+ I+
Sbjct:    2 NIRPLADRVLIKPAAAEEKTLGGIIIPDSAKEKPLKGEIVAVGN----GTKDEEMVVKVGDNVLYGKYAGTEIELDGEKYLIMRQADVLAII 89          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOBM (10 kDa chaperonin OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOBL (10 kDa chaperonin OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOBK (10 kDa chaperonin OS=Clostridium botulinum (strain Okra / Type B1) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOBJ (10 kDa chaperonin OS=Clostridium botulinum (strain Kyoto / Type A2) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOBH (10 kDa chaperonin OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOB6 (10 kDa chaperonin OS=Clostridium botulinum (strain 657 / Type Ba4) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOB1 (10 kDa chaperonin OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  291 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +I+PLGDRV++K    EE T  GI LP AA+ KPQ  EV+AVG G  V   ++ + +K G +V++SKYAG E++  G    I+++DD++ ++E
Sbjct:    2 NIRPLGDRVVIKRVEAEETTKSGIVLPGAAKEKPQVAEVIAVGPGGLVDGKEVKMELKVGDKVLFSKYAGNEVKIEGEEVTILKQDDILAVVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ACIF5 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 53993) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            ++PL DRV+++    E+KT GGI +P  A+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ACIF2 (10 kDa chaperonin OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=groS PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.831e-17
Identity = 41/93 (44.09%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            ++PL DRV+++    E+KT GGI +P  A+ KP  GE+VA G GK +   K+  + VK G QV+++KYAGTE++  G   L++REDD++ ++E
Sbjct:    3 LRPLHDRVVIRRLEEEQKTAGGIIIPDTAKEKPVRGEIVAAGHGKILEDGKVRALDVKTGDQVLFAKYAGTEIKVEGEELLVMREDDIMAVIE 95          
The following BLAST results are available for this feature:
BLAST of CB610628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_PARD83.831e-1748.9110 kDa chaperonin OS=Parabacteroides distasonis (s... [more]
CH10_CLOBM3.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBL3.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBK3.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBJ3.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOBH3.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOB63.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_CLOB13.831e-1744.0910 kDa chaperonin OS=Clostridium botulinum (strain... [more]
CH10_ACIF53.831e-1744.0910 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]
CH10_ACIF23.831e-1744.0910 kDa chaperonin OS=Acidithiobacillus ferrooxidan... [more]

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Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610628 ID=CB610628; Name=CB610628; organism=Citrus sinensis; type=EST; length=637bp
GGGGCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTC
GCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTG
CATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGG
TTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTC
AAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTT
GGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAAC
CTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACT
GATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGG
TGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGG
ACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGG
ACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGA
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