CB610628

Overview
NameCB610628
Unique NameCB610628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Mature Albedocdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_GEOLS (10 kDa chaperonin OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            ++PL DR++VK    EEKT GG+F+P  A+ KPQ GEV+AVG GK   + K   + VK G  +++ KYAGTE++ +G   L++REDDV+ ++E
Sbjct:    3 LRPLHDRIIVKRLEGEEKTAGGLFIPDTAKEKPQKGEVIAVGNGKKNDEGKCAPLDVKVGDSILFGKYAGTEVKVDGDEFLMMREDDVLAVIE 95          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ENTFA (10 kDa chaperonin OS=Enterococcus faecalis GN=groS PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 44/93 (47.31%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTV-GKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            +KPLGDRV++++   EEKT GGI L S A+ KPQ GEV+AVGEG+ +    K+ + VK G  V++ KY+GTE+++ G  +LIV   D++  +E
Sbjct:    2 LKPLGDRVVIRVAKEEEKTVGGIVLASVAKEKPQTGEVIAVGEGRVLENGTKVPMEVKIGDTVMFEKYSGTEVKYEGVEYLIVSAKDIIATVE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_BACCN (10 kDa chaperonin OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.031e-18
Identity = 41/92 (44.57%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +KPLGDRV++++   EEKT  GI LP  A+ KPQ G+V+AVG G+ +    ++ + V  G ++I+SKYAGTE+++ G ++LI+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVQAEEKTASGIVLPDTAKEKPQEGKVIAVGTGRVLENGERVALEVAAGDRIIFSKYAGTEVKYEGTDYLILRESDILAVI 93          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACHE (10 kDa chaperonin OS=Lactobacillus helveticus GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L++ E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACH4 (10 kDa chaperonin OS=Lactobacillus helveticus (strain DPC 4571) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 45/91 (49.45%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG       K+ +SVK G  V+Y +Y+GT +E+ G  +L++ E D++ I
Sbjct:    2 LQPIGDRVIVKVKDEEEKTVGGIVLASNAKKKPTEGEVVAVGEGAYASNGEKIPMSVKKGDVVLYDRYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_LACAC (10 kDa chaperonin OS=Lactobacillus acidophilus GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 47/91 (51.65%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGI 563
            ++P+GDRV+VK+K  EEKT GGI L S A+ KP  GEVVAVGEG  T    KL + VK G  V+Y KY+GT +E+ G  +L++ E D++ I
Sbjct:    2 LQPIGDRVIVKVKEEEEKTVGGIVLASNAKQKPTEGEVVAVGEGAYTSNGDKLPMVVKKGDVVLYDKYSGTNVEYEGEKYLVLHEKDILAI 92          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOK5 (10 kDa chaperonin OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + I+R+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_CLOK1 (10 kDa chaperonin OS=Clostridium kluyveri (strain NBRC 12016) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  294 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 569
            I+PLGDRV++K    EE T  GI LP +A+ KPQ  E+VAVG G  +   ++ + VK G +V++SKYAG E++ +G  + I+R+DD++ I+E
Sbjct:    3 IRPLGDRVVIKKIEAEETTKSGIVLPGSAKEKPQEAEIVAVGPGGVIDGKEIKMEVKVGDRVLFSKYAGNEVKIDGVEYTILRQDDILAIIE 94          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_ANASP (10 kDa chaperonin OS=Anabaena sp. (strain PCC 7120) GN=groS PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.653e-18
Identity = 42/94 (44.68%), Postives = 67/94 (71.28%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +++KPLGDRV VK+   EEKT GG++LP  A+ KPQ GEVVA+G GK     ++ ++ VK G +V+YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGLYLPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDKVLYSKYAGTDVKLGTEEYVLLSEKDILAVV 102          
BLAST of CB610628 vs. ExPASy Swiss-Prot
Match: CH10_TRIEI (10 kDa chaperonin OS=Trichodesmium erythraeum (strain IMS101) GN=groS PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.465e-18
Identity = 43/94 (45.74%), Postives = 66/94 (70.21%), Query Frame = 3
Query:  288 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 566
            +++KPLG+RV VK+   EEKT GGI LP +A+ KPQ GEVV+ G GK      + ++ VK G +V+YSKYAGT+++  G  ++++ E D++ I+
Sbjct:    9 STVKPLGERVFVKVSESEEKTAGGILLPDSAKEKPQVGEVVSAGPGKRNDDGTRAEMEVKVGDKVLYSKYAGTDIKLGGDEYVLLAEKDILAIV 102          
The following BLAST results are available for this feature:
BLAST of CB610628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_GEOLS2.031e-1847.3110 kDa chaperonin OS=Geobacter lovleyi (strain ATC... [more]
CH10_ENTFA2.031e-1847.3110 kDa chaperonin OS=Enterococcus faecalis GN=groS... [more]
CH10_BACCN2.031e-1844.5710 kDa chaperonin OS=Bacillus cereus subsp. cytoto... [more]
CH10_LACHE2.653e-1849.4510 kDa chaperonin OS=Lactobacillus helveticus GN=g... [more]
CH10_LACH42.653e-1849.4510 kDa chaperonin OS=Lactobacillus helveticus (str... [more]
CH10_LACAC2.653e-1851.6510 kDa chaperonin OS=Lactobacillus acidophilus GN=... [more]
CH10_CLOK52.653e-1845.6510 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_CLOK12.653e-1845.6510 kDa chaperonin OS=Clostridium kluyveri (strain ... [more]
CH10_ANASP2.653e-1844.6810 kDa chaperonin OS=Anabaena sp. (strain PCC 7120... [more]
CH10_TRIEI3.465e-1845.7410 kDa chaperonin OS=Trichodesmium erythraeum (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionALBEDO0003_IIaF_B12 Mature Albedo Citrus sinensis cDNA clone ALBEDO0003_IIaF_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB610628 ID=CB610628; Name=CB610628; organism=Citrus sinensis; type=EST; length=637bp
GGGGCTCGACTCTTCTTCAAATTTCAACTAGAAACCTTATCAAACTACTC
GCTCGCTTCTCGCTTATCATTTCCAATCAGAATCTCTCTCGCTCTCTCTG
CATCTGCAAGCAGATGGCGACAGCTCAGCTAACAGCGTCATCAATTAAGG
TTCCAGCAAGGAGCTTGACTTCATTCGATGGTCTCAGACCGTCTTCCGTC
AAGTTCGCTTCCGTCGGAGGTGCTGCCAGCCAACGCTCTTTCCGTCGCTT
GGTCGTTAAAGCCGCTGCAGTCGTGGCTCCCAAGTACACTTCAATTAAAC
CTTTGGGTGATAGAGTGCTGGTGAAAATCAAGACTGTAGAGGAGAAAACT
GATGGTGGTATTTTTCTGCCATCTGCAGCTCAAACAAAGCCTCAAGCAGG
TGAGGTGGTAGCTGTTGGCGAGGGGAAGACAGTTGGGAAGGCTAAACTGG
ACATATCTGTGAAGCCTGGGACCCAGGTCATCTATTCGAAGTATGCAGGG
ACTGAGTTGGAGTTCAACGGCGCAAATCATCTCATAGTGAGGGAGGATGA
CGTAGTTGGCATTCTTGAAACAGATGAAATCAAGGATCTTAAGCCCCTTA
ATGACAGAGTTTTCATCAAGGTTGCTGAGGCTGAGGA
back to top